AT3G27280 (PHB4, ATPHB4)

Aliases : PHB4, ATPHB4

Description : prohibitin 4

Gene families : OG0002891 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002891_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27280

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00079p00162380	ATPHB3, PHB3,...	Protein degradation.peptidase families.metallopeptidase...	0.05	OrthoFinder output from all 47 species
Ala_g12346	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.04	OrthoFinder output from all 47 species
Aop_g06918	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene03283.t1	ATPHB3, PHB3,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene03284.t1	ATPHB3, PHB3,...	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.02	OrthoFinder output from all 47 species
Cre12.g519350	ATPHB3, PHB3	Protein degradation.peptidase families.metallopeptidase...	0.02	OrthoFinder output from all 47 species
GSVIVT01001841001	No alias	Prohibitin-3, mitochondrial OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Gb_09762	No alias	prohibitin component of FtsH3/10 matrix-AAA protease heterodimers	0.04	OrthoFinder output from all 47 species
Gb_41670	ATPHB3, PHB3	prohibitin component of FtsH3/10 matrix-AAA protease heterodimers	0.04	OrthoFinder output from all 47 species
LOC_Os04g38900.1	ATPHB3, PHB3,...	prohibitin component of FtsH3/10 matrix-AAA protease heterodimers	0.02	OrthoFinder output from all 47 species
Lfl_g02715	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.04	OrthoFinder output from all 47 species
Mp2g21750.1	ATPHB3, PHB3	prohibitin component of FtsH3/10 matrix-AAA protease heterodimers	0.05	OrthoFinder output from all 47 species
Pir_g01191	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.02	OrthoFinder output from all 47 species
Pp3c23_22260V3.1	PHB4, ATPHB4,...	prohibitin 4	0.03	OrthoFinder output from all 47 species
Smo163805	ATPHB3, PHB3	Protein degradation.peptidase families.metallopeptidase...	0.07	OrthoFinder output from all 47 species
Solyc11g010190.1.1	ATPHB3, PHB3,...	prohibitin component of FtsH3/10 matrix-AAA protease heterodimers	0.04	OrthoFinder output from all 47 species
Solyc11g013260.3.1	ATPHB3, PHB3,...	prohibitin component of FtsH3/10 matrix-AAA protease heterodimers	0.05	OrthoFinder output from all 47 species
Spa_g12804	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.04	OrthoFinder output from all 47 species
Spa_g18847	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.03	OrthoFinder output from all 47 species
Spa_g48452	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.05	OrthoFinder output from all 47 species
Tin_g05866	ATPHB3, PHB3	component of FtsH3/10 matrix-AAA protease heterodimer &...	0.03	OrthoFinder output from all 47 species
Zm00001e041021_P001	ATPHB3, PHB3,...	prohibitin component of FtsH3/10 matrix-AAA protease heterodimers	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005747	mitochondrial respiratory chain complex I	IDA	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009505	plant-type cell wall	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0030964	NADH dehydrogenase complex	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0045271	respiratory chain complex I	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098798	mitochondrial protein-containing complex	None	Extended
CC	GO:0098800	inner mitochondrial membrane protein complex	None	Extended
CC	GO:0098803	respiratory chain complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1902495	transmembrane transporter complex	None	Extended
CC	GO:1990204	oxidoreductase complex	None	Extended
CC	GO:1990351	transporter complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006626	protein targeting to mitochondrion	IEP	HCCA
BP	GO:0006839	mitochondrial transport	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009640	photomorphogenesis	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0070585	protein localization to mitochondrion	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	HCCA
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001107	Band_7	34	214

External Links

No external refs found!

AT3G27280 (PHB4, ATPHB4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation