AT3G26810 (AFB2)

Aliases : AFB2

Description : auxin signaling F-box 2

Gene families : OG0000211 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000211_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G26810

Target	Alias	Description	ECC score	Gene Family Method
Adi_g023634	AFB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g056234	AFB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g076049	AFB2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107960	TIR1	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.02	OrthoFinder output from all 47 species
Als_g01939	COI1	component *(COI) of jasmonic acid receptor complex &...	0.02	OrthoFinder output from all 47 species
Aob_g02310	TIR1	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.03	OrthoFinder output from all 47 species
Aob_g03491	AFB2	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.02	OrthoFinder output from all 47 species
Aob_g11099	TIR1	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.03	OrthoFinder output from all 47 species
Aob_g36472	COI1	component *(COI) of jasmonic acid receptor complex &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene04141.t1	AFB2, Aspi01Gene04141	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene13871.t1	COI1, Aspi01Gene13871	component *(COI) of jasmonic acid receptor complex &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene40792.t1	COI1, Aspi01Gene40792	component *(COI) of jasmonic acid receptor complex &...	0.02	OrthoFinder output from all 47 species
Dcu_g04971	COI1	component *(COI) of jasmonic acid receptor complex &...	0.03	OrthoFinder output from all 47 species
Ehy_g06397	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16287	COI1	component *(COI) of jasmonic acid receptor complex &...	0.03	OrthoFinder output from all 47 species
LOC_Os05g37690.1	COI1, LOC_Os05g37690	component COI of jasmonic acid receptor complex	0.04	OrthoFinder output from all 47 species
Lfl_g03379	AFB2	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.03	OrthoFinder output from all 47 species
Lfl_g18913	COI1	component *(COI) of jasmonic acid receptor complex &...	0.02	OrthoFinder output from all 47 species
MA_263909g0010	COI1	Coronatine-insensitive protein homolog 1b OS=Oryza...	0.05	OrthoFinder output from all 47 species
MA_47869g0020	No alias	F-box protein FBX14 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_646265g0010	COI1	Coronatine-insensitive protein homolog 1a OS=Oryza...	0.03	OrthoFinder output from all 47 species
MA_78902g0010	AFB5	component TIR1/AFB of auxin receptor complex	0.04	OrthoFinder output from all 47 species
MA_92309g0010	TIR1	component TIR1/AFB of auxin receptor complex. component...	0.03	OrthoFinder output from all 47 species
Msp_g15130	AFB2	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.03	OrthoFinder output from all 47 species
Pnu_g18805	AFB2	substrate adaptor of SCF E3 ubiquitin ligase *(TIR1/AFB)...	0.03	OrthoFinder output from all 47 species
Smo168175	AFB2	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
Tin_g10047	AFB2	substrate adaptor of SCF E3 ubiquiTin ligase *(TIR1/AFB)...	0.02	OrthoFinder output from all 47 species
Zm00001e000649_P001	Zm00001e000649	component TIR1/AFB of auxin receptor complex. component...	0.03	OrthoFinder output from all 47 species
Zm00001e001167_P003	COI1, Zm00001e001167	component COI of jasmonic acid receptor complex	0.06	OrthoFinder output from all 47 species
Zm00001e026935_P001	COI1, Zm00001e026935	component COI of jasmonic acid receptor complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002237	response to molecule of bacterial origin	IEP	Interproscan
BP	GO:0002237	response to molecule of bacterial origin	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
BP	GO:0007165	signal transduction	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0010011	auxin binding	IGI	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010103	stomatal complex morphogenesis	RCA	Interproscan
BP	GO:0010152	pollen maturation	IGI	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042562	hormone binding	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048443	stamen development	IGI	Interproscan
BP	GO:0048443	stamen development	RCA	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0090626	plant epidermis morphogenesis	None	Extended
BP	GO:0090698	post-embryonic plant morphogenesis	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
BP	GO:0001944	vasculature development	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
MF	GO:0008477	purine nucleosidase activity	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0008930	methylthioadenosine nucleosidase activity	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	HCCA
BP	GO:0019509	L-methionine salvage from methylthioadenosine	IEP	HCCA
MF	GO:0019825	oxygen binding	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043102	amino acid salvage	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
MF	GO:0051740	ethylene binding	IEP	HCCA
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	HCCA
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	HCCA
BP	GO:0071265	L-methionine biosynthetic process	IEP	HCCA
BP	GO:0071267	L-methionine salvage	IEP	HCCA
MF	GO:0072328	alkene binding	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G26810 (AFB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation