AT3G26744 (ATICE1, ICE1, SCRM)

Aliases : ATICE1, ICE1, SCRM

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0001330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001330_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G26744

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00085090	evm_27.TU.AmTr_v1...	Transcription factor SCREAM2 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
AMTR_s00184p00048850	bHLH093,...	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
Adi_g005708	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g04435	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17032	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14438	ATICE1, ICE1, SCRM	transcription factor *(ICE1/2) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene03868.t2	SCRM2, ICE2,...	transcription factor *(ICE1/2) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene66445.t1	ATICE1, ICE1,...	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0007.g010652	SCRM2, ICE2	bHLH-type transcription factor & original description: CDS=1-1947	0.03	OrthoFinder output from all 47 species
Cba_g75218	SCRM2, ICE2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g05615	ATICE1, ICE1, SCRM	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g02958	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g16909	ATICE1, ICE1, SCRM	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01004405001	bHLH093	RNA biosynthesis.transcriptional activation.bHLH...	0.04	OrthoFinder output from all 47 species
GSVIVT01032998001	ATICE1, ICE1, SCRM	External stimuli response.temperature.ICE-CBF cold...	0.03	OrthoFinder output from all 47 species
LOC_Os01g70310.2	ATICE1, ICE1,...	transcription factor (bHLH). transcription factor (ICE1\|2)	0.05	OrthoFinder output from all 47 species
Len_g04800	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.04	OrthoFinder output from all 47 species
MA_20585g0010	SCRM2, ICE2	transcription factor (bHLH). transcription factor (ICE1\|2)	0.01	OrthoFinder output from all 47 species
MA_336364g0010	SCRM2, ICE2	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_448849g0010	ATICE1, ICE1, SCRM	transcription factor (bHLH). transcription factor (ICE1\|2)	0.04	OrthoFinder output from all 47 species
MA_63506g0010	SCRM2, ICE2	transcription factor (bHLH). transcription factor (ICE1\|2)	0.03	OrthoFinder output from all 47 species
Mp4g04910.1	ATICE1, ICE1, SCRM	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Mp4g04920.1	ATICE1, ICE1, SCRM	transcription factor (bHLH). transcription factor (ICE1\|2)	0.02	OrthoFinder output from all 47 species
Msp_g13280	ATICE1, ICE1, SCRM	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g55587	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002409	SCRM2, ICE2	bHLH-type transcription factor & original description: CDS=1-732	0.03	OrthoFinder output from all 47 species
Sam_g12143	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Smo75047	ATICE1, ICE1, SCRM	External stimuli response.temperature.ICE-CBF cold...	0.02	OrthoFinder output from all 47 species
Solyc02g091690.3.1	bHLH093, Solyc02g091690	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Solyc12g088130.3.1	bHLH093, Solyc12g088130	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g04208	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.07	OrthoFinder output from all 47 species
Spa_g06696	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g22348	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g26446	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g08227	SCRM2, ICE2	transcription factor *(ICE1/2) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000292_P001	bHLH093, Zm00001e000292	transcription factor (bHLH)	0.01	OrthoFinder output from all 47 species
Zm00001e018755_P001	ATICE1, ICE1,...	transcription factor (bHLH). transcription factor (ICE1\|2)	0.04	OrthoFinder output from all 47 species
Zm00001e021526_P001	ATICE1, ICE1,...	transcription factor (bHLH). transcription factor (ICE1\|2)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IDA	Interproscan
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003677	DNA binding	TAS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009410	response to xenobiotic stimulus	RCA	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009640	photomorphogenesis	RCA	Interproscan
BP	GO:0009756	carbohydrate mediated signaling	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009845	seed germination	RCA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009909	regulation of flower development	RCA	Interproscan
BP	GO:0009933	meristem structural organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010162	seed dormancy process	RCA	Interproscan
BP	GO:0010182	sugar mediated signaling pathway	RCA	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010440	stomatal lineage progression	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
BP	GO:0016567	protein ubiquitination	RCA	Interproscan
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	RCA	Interproscan
BP	GO:0016579	protein deubiquitination	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019915	lipid storage	RCA	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022611	dormancy process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043687	post-translational protein modification	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	IDA	Interproscan
BP	GO:0045893	positive regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	RCA	Interproscan
BP	GO:0048532	anatomical structure arrangement	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050826	response to freezing	IMP	Interproscan
BP	GO:0050826	response to freezing	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051235	maintenance of location	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004806	triglyceride lipase activity	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	310	352

External Links

No external refs found!

AT3G26744 (ATICE1, ICE1, SCRM)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation