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AT3G24800 (PRT1)


Aliases : PRT1

Description : proteolysis 1


Gene families : OG0002242 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002242_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G24800
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
Ceric.20G064900.1 PRT1, Ceric.20G064900 type-II-residues E3 ubiquitin ligase *(PRT1) & original... 0.02 OrthoFinder output from all 47 species
Cre02.g098200 PRT1 Protein degradation.N-end rule pathway of targeted... 0.01 OrthoFinder output from all 47 species
GSVIVT01028643001 PRT1 Protein degradation.N-end rule pathway of targeted... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015680 PRT1 type-II-residues E3 ubiquitin ligase *(PRT1) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex TAS Interproscan
MF GO:0004842 ubiquitin-protein transferase activity TAS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process TAS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
BP GO:0002229 defense response to oomycetes IEP HCCA
BP GO:0002239 response to oomycetes IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003691 double-stranded telomeric DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005200 structural constituent of cytoskeleton IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
CC GO:0005885 Arp2/3 protein complex IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0034635 glutathione transport IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
MF GO:0042162 telomeric DNA binding IEP HCCA
BP GO:0042939 tripeptide transport IEP HCCA
MF GO:0043047 single-stranded telomeric DNA binding IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
BP GO:0048507 meristem development IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0072337 modified amino acid transport IEP HCCA
BP GO:0072348 sulfur compound transport IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
MF GO:0098847 sequence-specific single stranded DNA binding IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR000433 Znf_ZZ 306 347
IPR027370 Znf-RING_euk 192 228
No external refs found!