AT3G24220 (NCED6, ATNCED6)

Aliases : NCED6, ATNCED6

Description : nine-cis-epoxycarotenoid dioxygenase 6

Gene families : OG0000239 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000239_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G24220
Cluster	HCCA: Cluster_61

Target	Alias	Description	ECC score	Gene Family Method
Adi_g011769	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.05	OrthoFinder output from all 47 species
Adi_g074127	ATCCD1, CCD1,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Als_g18482	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Als_g23969	ATNCED5, NCED5	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene10157.t1	CCD4, NCED4,...	EC_1.13 oxidoreductase acting on single donor with...	0.03	OrthoFinder output from all 47 species
Aspi01Gene12676.t1	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Aspi01Gene19977.t1	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Aspi01Gene24904.t1	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Ceric.01G106600.1	ATCCD1, CCD1,...	EC_1.13 oxidoreductase acting on single donor with...	0.03	OrthoFinder output from all 47 species
Dac_g10533	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Dac_g12313	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.03	OrthoFinder output from all 47 species
Ehy_g25744	CCD4, NCED4	EC_1.13 oxidoreductase acting on single donor with...	0.04	OrthoFinder output from all 47 species
GSVIVT01036862001	CCD4, NCED4	Probable carotenoid cleavage dioxygenase 4,...	0.04	OrthoFinder output from all 47 species
Gb_04986	CCD4, NCED4	carotenoid cleavage dioxygenase (CCD4)	0.06	OrthoFinder output from all 47 species
Gb_14132	NCED3, SIS7,...	Enzyme classification.EC_1 oxidoreductases.EC_1.13...	0.04	OrthoFinder output from all 47 species
MA_90573g0010	CCD4, NCED4	carotenoid cleavage dioxygenase (CCD4)	0.03	OrthoFinder output from all 47 species
Msp_g05882	NCED3, SIS7,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g05883	ATNCED9, NCED9	EC_1.13 oxidoreductase acting on single donor with...	0.04	OrthoFinder output from all 47 species
Ore_g18596	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Ore_g36229	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.03	OrthoFinder output from all 47 species
Pir_g05163	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g14052	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.03	OrthoFinder output from all 47 species
Ppi_g29309	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.03	OrthoFinder output from all 47 species
Ppi_g32214	NCED3, SIS7,...	EC_1.13 oxidoreductase acting on single donor with...	0.02	OrthoFinder output from all 47 species
Sam_g16864	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g30410	No alias	EC_1.13 oxidoreductase acting on single donor with...	0.03	OrthoFinder output from all 47 species
Solyc05g053530.1.1	NCED6, ATNCED6,...	neoxanthin cleavage protein	0.03	OrthoFinder output from all 47 species
Solyc08g075480.4.1	CCD4, NCED4,...	carotenoid cleavage dioxygenase (CCD4)	0.03	OrthoFinder output from all 47 species
Solyc08g075490.4.1	CCD4, NCED4,...	carotenoid cleavage dioxygenase (CCD4)	0.04	OrthoFinder output from all 47 species
Zm00001e011508_P001	NCED3, SIS7,...	neoxanthin cleavage protein	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006714	sesquiterpenoid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006721	terpenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	IEP	Interproscan
BP	GO:0009687	abscisic acid metabolic process	None	Extended
BP	GO:0009688	abscisic acid biosynthetic process	RCA	Interproscan
BP	GO:0009688	abscisic acid biosynthetic process	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010114	response to red light	IEP	Interproscan
MF	GO:0010436	carotenoid dioxygenase activity	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016106	sesquiterpenoid biosynthetic process	None	Extended
BP	GO:0016114	terpenoid biosynthetic process	RCA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	None	Extended
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043288	apocarotenoid metabolic process	None	Extended
BP	GO:0043289	apocarotenoid biosynthetic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
MF	GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	IDA	Interproscan
MF	GO:0045549	9-cis-epoxycarotenoid dioxygenase activity	TAS	Interproscan
BP	GO:0046165	alcohol biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051213	dioxygenase activity	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1902644	tertiary alcohol metabolic process	None	Extended
BP	GO:1902645	tertiary alcohol biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004620	phospholipase activity	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009737	response to abscisic acid	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
BP	GO:0097305	response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004294	Carotenoid_Oase	106	568

External Links

No external refs found!

AT3G24220 (NCED6, ATNCED6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation