AT3G22330 (PMH2, ATRH53)

Aliases : PMH2, ATRH53

Description : putative mitochondrial RNA helicase 2

Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G22330

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00127820	PMH2, ATRH53,...	RNA processing.organelle machineries.RNA...	0.05	OrthoFinder output from all 47 species
Adi_g021673	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g055950	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g056600	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g09620	PRH75	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g36308	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene72752.t1	PRH75, Aspi01Gene72752	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0022.g016145	PRH75	not classified & original description: CDS=1-2178	0.03	OrthoFinder output from all 47 species
Azfi_s2641.g112487	emb1138	not classified & original description: CDS=202-2694	0.04	OrthoFinder output from all 47 species
Cba_g07520	emb1138	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g18561	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.06G054800.1	emb1138, Ceric.06G054800	not classified & original description: pacid=50619432...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000093.151	emb1138	DEAD-box ATP-dependent RNA helicase 3A, chloroplastic OS=Zea mays	0.02	OrthoFinder output from all 47 species
Dac_g02286	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g21286	emb1138	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g21458	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Gb_10087	PMH2, ATRH53	DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
LOC_Os07g05050.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.04	OrthoFinder output from all 47 species
Len_g55591	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g10755	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g22012	emb1138	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
Nbi_g07434	PRH75	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g28749	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Ore_g25279	PRH75	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g05277	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.02	OrthoFinder output from all 47 species
Solyc12g006320.3.1	PMH2, ATRH53,...	RNA helicase (PMH)	0.05	OrthoFinder output from all 47 species
Spa_g06515	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species
Spa_g08414	emb1138	group-II intron splicing RNA helicase *(RH3) & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IMP	Interproscan
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004558	alpha-1,4-glucosidase activity	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0009913	epidermal cell differentiation	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
MF	GO:0015926	glucosidase activity	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
BP	GO:0030855	epithelial cell differentiation	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
MF	GO:0090599	alpha-glucosidase activity	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	341	443
IPR011545	DEAD/DEAH_box_helicase_dom	128	295

External Links

No external refs found!

AT3G22330 (PMH2, ATRH53)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation