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AT3G21060


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0004928 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G21060
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Als_g10230 No alias component *(RBL/SWD1) of COMPASS histone trimethylation... 0.02 OrthoFinder output from all 47 species
Aob_g06649 No alias component *(RBL/SWD1) of COMPASS histone trimethylation... 0.05 OrthoFinder output from all 47 species
Cre03.g195750 No alias Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Lfl_g03233 No alias component *(RBL/SWD1) of COMPASS histone trimethylation... 0.03 OrthoFinder output from all 47 species
MA_826527g0010 No alias component RBL of COMPASS histone trimethylation complex 0.03 OrthoFinder output from all 47 species
Mp2g01020.1 No alias component RBL of COMPASS histone trimethylation complex 0.03 OrthoFinder output from all 47 species
Nbi_g02198 No alias component *(RBL/SWD1) of COMPASS histone trimethylation... 0.03 OrthoFinder output from all 47 species
Ore_g34036 No alias component *(RBL/SWD1) of COMPASS histone trimethylation... 0.02 OrthoFinder output from all 47 species
Solyc01g096950.4.1 Solyc01g096950 component RBL of COMPASS histone trimethylation complex 0.04 OrthoFinder output from all 47 species
Spa_g10803 No alias component *(RBL/SWD1) of COMPASS histone trimethylation... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005834 heterotrimeric G-protein complex ISS Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem IMP Interproscan
CC GO:0048188 Set1C/COMPASS complex IPI Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0000910 cytokinesis IEP HCCA
BP GO:0000911 cytokinesis by cell plate formation IEP HCCA
BP GO:0001932 regulation of protein phosphorylation IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009825 multidimensional cell growth IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0015804 neutral amino acid transport IEP HCCA
BP GO:0015824 proline transport IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
MF GO:0033549 MAP kinase phosphatase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042325 regulation of phosphorylation IEP HCCA
BP GO:0043405 regulation of MAP kinase activity IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043473 pigmentation IEP HCCA
BP GO:0043476 pigment accumulation IEP HCCA
BP GO:0043478 pigment accumulation in response to UV light IEP HCCA
BP GO:0043479 pigment accumulation in tissues in response to UV light IEP HCCA
BP GO:0043480 pigment accumulation in tissues IEP HCCA
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light IEP HCCA
BP GO:0043549 regulation of kinase activity IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045859 regulation of protein kinase activity IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051338 regulation of transferase activity IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 67 95
IPR001680 WD40_repeat 216 243
IPR001680 WD40_repeat 22 51
IPR001680 WD40_repeat 279 323
No external refs found!