AT3G20880 (WIP4)

Aliases : WIP4

Description : WIP domain protein 4

Gene families : OG0001814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001814_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G20880
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method
Ceric.24G008900.1	WIP2, NTT,...	C2H2 subclass WIP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dcu_g06979	WIP2, NTT	C2H2 subclass WIP transcription factor & original...	0.03	OrthoFinder output from all 47 species
LOC_Os01g63980.1	WIP4, LOC_Os01g63980	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os05g37190.1	WIP5, LOC_Os05g37190	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os06g40960.1	WIP2, NTT, LOC_Os06g40960	C2H2 zinc finger transcription factor	0.01	OrthoFinder output from all 47 species
LOC_Os08g39390.1	WIP2, NTT, LOC_Os08g39390	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os09g10980.1	WIP5, LOC_Os09g10980	C2H2 zinc finger transcription factor	0.01	OrthoFinder output from all 47 species
LOC_Os09g13680.1	WIP6, DOT5,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Pnu_g12905	WIP2, NTT	C2H2 subclass WIP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc11g062060.3.1	WIP2, NTT, Solyc11g062060	C2H2 zinc finger transcription factor	0.01	OrthoFinder output from all 47 species
Spa_g15966	WIP5	C2H2 subclass WIP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Zm00001e003504_P001	WIP2, NTT, Zm00001e003504	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e009663_P001	WIP6, DOT5,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e019211_P001	WIP4, Zm00001e019211	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e024373_P001	WIP2, NTT, Zm00001e024373	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e034518_P001	WIP2, NTT, Zm00001e034518	C2H2 zinc finger transcription factor	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0004364	glutathione transferase activity	IEP	HCCA
MF	GO:0004422	hypoxanthine phosphoribosyltransferase activity	IEP	HCCA
MF	GO:0004602	glutathione peroxidase activity	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006144	purine nucleobase metabolic process	IEP	HCCA
BP	GO:0006166	purine ribonucleoside salvage	IEP	HCCA
BP	GO:0006168	adenine salvage	IEP	HCCA
BP	GO:0006177	GMP biosynthetic process	IEP	HCCA
BP	GO:0006178	guanine salvage	IEP	HCCA
BP	GO:0006188	IMP biosynthetic process	IEP	HCCA
BP	GO:0006546	glycine catabolic process	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	HCCA
BP	GO:0009116	nucleoside metabolic process	IEP	HCCA
BP	GO:0009119	ribonucleoside metabolic process	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009163	nucleoside biosynthetic process	IEP	HCCA
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009958	positive gravitropism	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010082	regulation of root meristem growth	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
BP	GO:0032261	purine nucleotide salvage	IEP	HCCA
BP	GO:0032263	GMP salvage	IEP	HCCA
BP	GO:0032264	IMP salvage	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
BP	GO:0042278	purine nucleoside metabolic process	IEP	HCCA
BP	GO:0042451	purine nucleoside biosynthetic process	IEP	HCCA
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	HCCA
BP	GO:0043096	purine nucleobase salvage	IEP	HCCA
BP	GO:0043101	purine-containing compound salvage	IEP	HCCA
BP	GO:0043173	nucleotide salvage	IEP	HCCA
BP	GO:0043174	nucleoside salvage	IEP	HCCA
MF	GO:0043295	glutathione binding	IEP	HCCA
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	HCCA
BP	GO:0046037	GMP metabolic process	IEP	HCCA
BP	GO:0046040	IMP metabolic process	IEP	HCCA
BP	GO:0046083	adenine metabolic process	IEP	HCCA
BP	GO:0046084	adenine biosynthetic process	IEP	HCCA
BP	GO:0046098	guanine metabolic process	IEP	HCCA
BP	GO:0046099	guanine biosynthetic process	IEP	HCCA
BP	GO:0046100	hypoxanthine metabolic process	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	HCCA
BP	GO:0046129	purine ribonucleoside biosynthetic process	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
CC	GO:0071944	cell periphery	IEP	HCCA
MF	GO:0072341	modified amino acid binding	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
MF	GO:0106130	purine phosphoribosyltransferase activity	IEP	HCCA
BP	GO:0106380	purine ribonucleotide salvage	IEP	HCCA
MF	GO:1900750	oligopeptide binding	IEP	HCCA
BP	GO:1901657	glycosyl compound metabolic process	IEP	HCCA
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G20880 (WIP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation