AT3G20420 (ATRTL2, RTL2)

Aliases : ATRTL2, RTL2

Description : RNAse THREE-like protein 2

Gene families : OG0000378 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G20420
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00252500	ATRTL2, RTL2,...	Ribonuclease 3-like protein 2 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
AT5G45150	RTL3	RNAse THREE-like protein 3	0.03	OrthoFinder output from all 47 species
Cba_g62226	DCL1, CAF,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.22G041000.1	DCL1, CAF,...	endoribonuclease component *(DCL1) of DCL1-HYL1 miRNA...	0.03	OrthoFinder output from all 47 species
Dde_g37376	ATDCL2, DCL2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_118446g0010	ATDCL3, DCL3	Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
MA_311065g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Nbi_g25918	ATDCL3, DCL3	endoribonuclease (DCL2) of transacting siRNA pathway &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003725	double-stranded RNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	IMP	Interproscan
MF	GO:0004525	ribonuclease III activity	ISS	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	ta-siRNA processing	RCA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0030422	siRNA processing	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0035196	miRNA processing	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051607	defense response to virus	RCA	Interproscan
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0070918	regulatory ncRNA processing	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009624	response to nematode	IEP	HCCA
MF	GO:0015562	efflux transmembrane transporter activity	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000999	RNase_III_dom	93	201
IPR014720	dsRBD_dom	232	292
IPR014720	dsRBD_dom	314	385

External Links

No external refs found!

AT3G20420 (ATRTL2, RTL2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation