AT3G19500

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G19500

Target	Alias	Description	ECC score	Gene Family Method
Adi_g087038	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g05285	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g06030	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09878	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.32G003100.1	Ceric.32G003100	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.32G034500.1	Ceric.32G034500	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g08512	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g23926	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01018886001	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.03	OrthoFinder output from all 47 species
LOC_Os05g14010.1	LOC_Os05g14010	transcription factor (bHLH)	0.02	OrthoFinder output from all 47 species
Len_g46884	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g32475	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011237	No alias	bHLH-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Solyc03g120530.3.1	Solyc03g120530	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Spa_g31102	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g44400	No alias	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005748_P002	Zm00001e005748	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
BP	GO:0001101	response to acid chemical	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
CC	GO:0005663	DNA replication factor C complex	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009269	response to desiccation	IEP	HCCA
BP	GO:0009415	response to water	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009631	cold acclimation	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G19500

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation