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  5. AT3G18760

AT3G18760


Description : Translation elongation factor EF1B/ribosomal protein S6 family protein


Gene families : OG0007442 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007442_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G18760

Target Alias Description ECC score Gene Family Method Actions
Cba_g19757 No alias component *(uS6m) of small mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
LOC_Os01g12090.1 LOC_Os01g12090 component mtRPS6 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
MA_83179g0010 No alias component mtRPS6 of small ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Mp1g14210.1 No alias component mtRPS6 of small ribosomal subunit proteome 0.02 OrthoFinder output from all 47 species
Sam_g12182 No alias component *(uS6m) of small mitoribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Solyc05g054990.3.1 Solyc05g054990 component mtRPS6 of small ribosomal subunit proteome 0.06 OrthoFinder output from all 47 species
Zm00001e016444_P002 Zm00001e016444 component mtRPS6 of small ribosomal subunit proteome 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005840 ribosome ISS Interproscan
BP GO:0006412 translation ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
CC GO:0005618 cell wall IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
CC GO:0015935 small ribosomal subunit IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0022625 cytosolic large ribosomal subunit IEP HCCA
CC GO:0022626 cytosolic ribosome IEP HCCA
CC GO:0022627 cytosolic small ribosomal subunit IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR000529 Ribosomal_S6 4 95
No external refs found!