AT3G18710 (PUB29, ATPUB29)

Aliases : PUB29, ATPUB29

Description : plant U-box 29

Gene families : OG0000127 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000127_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G18710

Target	Alias	Description	ECC score	Gene Family Method
AT3G11840	PUB24	plant U-box 24	0.02	OrthoFinder output from all 47 species
AT3G52450	PUB22	plant U-box 22	0.02	OrthoFinder output from all 47 species
Adi_g077175	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g02974	PUB23	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g11423	PUB15	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g23643	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g30969	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene35689.t1	PUB25, Aspi01Gene35689	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene43215.t1	PUB24, Aspi01Gene43215	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene43218.t1	PUB24, Aspi01Gene43218	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene44311.t1	PUB22, Aspi01Gene44311	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g56659	PUB26	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Ceric.08G065500.1	PUB26, Ceric.08G065500	U-Box-group-III E3 ubiquitin ligase & original...	0.05	OrthoFinder output from all 47 species
Dcu_g11691	PUB26	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dcu_g18955	PUB26	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Dde_g24916	PUB25	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g14998	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g16356	PUB22	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g18076	PUB25	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g21913	PUB26	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01026764001	PUB22	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
Len_g01213	PUB25	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g09678	PUB25	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g16219	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g24284	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10432981g0010	PUB22	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
MA_9494855g0010	PUB26	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Msp_g11599	PUB23	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g47390	PUB25	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ore_g08919	PUB25	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g34239	No alias	E3 ubiquitin ligase & original description: none	0.14	OrthoFinder output from all 47 species
Pnu_g12004	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Pnu_g19356	PUB26	U-Box-group-III E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g04485	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo416356	PUB26	U-box domain-containing protein 30 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Solyc11g005700.1.1	CMPG2, ATCMPG2,...	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Spa_g03410	PUB26	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Tin_g06727	PUB26	U-Box-group-III E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g15093	PUB26	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002598_P001	Zm00001e002598	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Zm00001e041397_P001	PUB23, Zm00001e041397	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Interproscan
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
MF	GO:0033612	receptor serine/threonine kinase binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IPI	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
BP	GO:0010440	stomatal lineage progression	IEP	HCCA
BP	GO:0010638	positive regulation of organelle organization	IEP	HCCA
CC	GO:0031209	SCAR complex	IEP	HCCA
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	HCCA
BP	GO:0032970	regulation of actin filament-based process	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0051125	regulation of actin nucleation	IEP	HCCA
BP	GO:0051127	positive regulation of actin nucleation	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051495	positive regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
MF	GO:0097472	cyclin-dependent protein kinase activity	IEP	HCCA
BP	GO:0110053	regulation of actin filament organization	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:1902905	positive regulation of supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	12	79

External Links

No external refs found!

AT3G18710 (PUB29, ATPUB29)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation