AT3G18550 (BRC1, ATTCP18, TCP18)

Aliases : BRC1, ATTCP18, TCP18

Description : TCP family transcription factor

Gene families : OG0000529 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000529_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G18550

Target	Alias	Description	ECC score	Gene Family Method
AT1G67260	TCP1	TCP family transcription factor	0.01	OrthoFinder output from all 47 species
AT1G68800	TCP12, BRC2	TCP domain protein 12	0.04	OrthoFinder output from all 47 species
Aev_g04815	TCP3	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene02912.t1	ATTCP24, TCP24,...	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene02925.t1	TCP3, Aspi01Gene02925	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene64947.t1	TCP3, Aspi01Gene64947	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os01g11550.1	TCP4, MEE35,...	transcription factor (TCP)	0.04	OrthoFinder output from all 47 species
LOC_Os07g05720.1	TCP2, LOC_Os07g05720	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
LOC_Os09g24480.1	BRC1, ATTCP18,...	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
LOC_Os12g42190.1	ATTCP24, TCP24,...	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
Nbi_g10533	ATTCP24, TCP24	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g26727	TCP13, TFPD, PTF1	TCP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc01g016414.1.1	TCP10, Solyc01g016414	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
Solyc03g045030.2.1	TCP12, BRC2,...	transcription factor (TCP)	0.01	OrthoFinder output from all 47 species
Solyc06g069240.2.1	TCP12, BRC2,...	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Zm00001e032821_P001	TCP2, Zm00001e032821	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060688	regulation of morphogenesis of a branching structure	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905428	regulation of plant organ formation	None	Extended
BP	GO:2000032	regulation of secondary shoot formation	IMP	Interproscan
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0009691	cytokinin biosynthetic process	IEP	HCCA
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0052622	ATP dimethylallyltransferase activity	IEP	HCCA
MF	GO:0052623	ADP dimethylallyltransferase activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	147	308

External Links

No external refs found!

AT3G18550 (BRC1, ATTCP18, TCP18)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation