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AT3G17060


Description : Pectin lyase-like superfamily protein


Gene families : OG0022452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0022452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G17060
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00123p00050980 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.15 OrthoFinder output from all 47 species
GSVIVT01034985001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 OrthoFinder output from all 47 species
LOC_Os03g19610.1 LOC_Os03g19610 pectin methylesterase 0.06 OrthoFinder output from all 47 species
Zm00001e020795_P001 Zm00001e020795 pectin methylesterase 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009505 plant-type cell wall ISS Interproscan
BP GO:0030048 actin filament-based movement RCA Interproscan
MF GO:0030599 pectinesterase activity ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
MF GO:0005548 phospholipid transporter activity IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
BP GO:0006071 glycerol metabolic process IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008526 phosphatidylinositol transfer activity IEP HCCA
MF GO:0008889 glycerophosphodiester phosphodiesterase activity IEP HCCA
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP HCCA
BP GO:0009664 plant-type cell wall organization IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
BP GO:0019400 alditol metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
MF GO:0120014 phospholipid transfer activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 46 332
No external refs found!