AT3G16940

Description : calmodulin binding;transcription regulators

Gene families : OG0000648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000648_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16940

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00038p00173360	CAMTA3, SR1,...	RNA biosynthesis.transcriptional activation.CAMTA...	0.02	OrthoFinder output from all 47 species
Aspi01Gene72267.t1	CAMTA3, SR1,...	CAMTA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.12G055700.1	CAMTA3, SR1,...	CAMTA-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.24G013800.1	CAMTA3, SR1,...	CAMTA-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.31G019600.1	Ceric.31G019600	CAMTA-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
GSVIVT01004860001	CAMTA3, SR1	RNA biosynthesis.transcriptional activation.CAMTA...	0.04	OrthoFinder output from all 47 species
Gb_11889	CAMTA3, SR1	transcription factor (CAMTA)	0.05	OrthoFinder output from all 47 species
MA_10428975g0010	No alias	transcription factor (CAMTA)	0.04	OrthoFinder output from all 47 species
Pir_g41087	No alias	CAMTA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g11905	CAMTA3, SR1	CAMTA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc05g015650.3.1	Solyc05g015650	transcription factor (CAMTA)	0.02	OrthoFinder output from all 47 species
Tin_g21019	CAMTA3, SR1	CAMTA-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e012888_P005	CAMTA3, SR1,...	transcription factor (CAMTA)	0.03	OrthoFinder output from all 47 species
Zm00001e037974_P002	CAMTA3, SR1,...	transcription factor (CAMTA)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005516	calmodulin binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000165	MAPK cascade	IEP	HCCA
MF	GO:0001653	peptide receptor activity	IEP	HCCA
BP	GO:0002229	defense response to oomycetes	IEP	HCCA
BP	GO:0002239	response to oomycetes	IEP	HCCA
BP	GO:0002376	immune system process	IEP	HCCA
MF	GO:0004383	guanylate cyclase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	HCCA
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005769	early endosome	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0008219	cell death	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
MF	GO:0009975	cyclase activity	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016849	phosphorus-oxygen lyase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1900150	regulation of defense response to fungus	IEP	HCCA
BP	GO:1900424	regulation of defense response to bacterium	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA
BP	GO:2000031	regulation of salicylic acid mediated signaling pathway	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020683	DUF3447	493	571
IPR000048	IQ_motif_EF-hand-BS	732	751
IPR000048	IQ_motif_EF-hand-BS	691	707
IPR005559	CG-1_dom	31	144
IPR002909	IPT_dom	306	389

External Links

No external refs found!

AT3G16940

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation