AT3G16830 (TPR2)

Aliases : TPR2

Description : TOPLESS-related 2

Gene families : OG0000427 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000427_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16830

Target	Alias	Description	ECC score	Gene Family Method
Adi_g117102	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.02	OrthoFinder output from all 47 species
Ala_g06729	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.02	OrthoFinder output from all 47 species
Ala_g18277	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.03	OrthoFinder output from all 47 species
Als_g27970	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.03	OrthoFinder output from all 47 species
Cba_g61200	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.02	OrthoFinder output from all 47 species
Ceric.07G013800.1	TPL, WSIP1,...	transcriptional co-repressor *(TPL/TPR) & original...	0.05	OrthoFinder output from all 47 species
Dcu_g19733	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.02	OrthoFinder output from all 47 species
Dde_g03492	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g07917	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.04	OrthoFinder output from all 47 species
Ehy_g08671	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01015571001	WSIP2, TPR4	RNA biosynthesis.transcriptional repression.TPL/TPR...	0.04	OrthoFinder output from all 47 species
Gb_32130	TPL, WSIP1	transcriptional repressor (TPL). transcriptional...	0.06	OrthoFinder output from all 47 species
Gb_37153	TPL, WSIP1	transcriptional repressor (TPL). transcriptional...	0.05	OrthoFinder output from all 47 species
LOC_Os03g14980.1	TPR1, LOC_Os03g14980	transcriptional repressor (TPL). transcriptional...	0.03	OrthoFinder output from all 47 species
MA_10429317g0020	TPR2	Protein TPR2 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
MA_10430083g0010	TPL, WSIP1	transcriptional repressor (TPL). transcriptional...	0.04	OrthoFinder output from all 47 species
MA_16979g0020	TPL, WSIP1	Topless-related protein 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_33469g0010	TPL, WSIP1	Protein TPR2 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Mp7g17410.1	TPR1	transcriptional repressor (TPL). transcriptional...	0.06	OrthoFinder output from all 47 species
Ore_g17223	TPL, WSIP1	transcriptional co-repressor *(TPL/TPR) & original...	0.05	OrthoFinder output from all 47 species
Sam_g16347	No alias	transcriptional co-repressor *(TPL/TPR) & original...	0.03	OrthoFinder output from all 47 species
Smo439915	TPR1	RNA biosynthesis.transcriptional repression.TPL/TPR...	0.03	OrthoFinder output from all 47 species
Smo88677	TPL, WSIP1	RNA biosynthesis.transcriptional repression.TPL/TPR...	0.04	OrthoFinder output from all 47 species
Zm00001e001080_P001	TPR1, Zm00001e001080	transcriptional repressor (TPL). transcriptional...	0.05	OrthoFinder output from all 47 species
Zm00001e038558_P003	TPR1, Zm00001e038558	transcriptional repressor (TPL). transcriptional...	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	RCA	Interproscan
BP	GO:0000910	cytokinesis	None	Extended
BP	GO:0000911	cytokinesis by cell plate formation	RCA	Interproscan
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010014	meristem initiation	None	Extended
BP	GO:0010072	primary shoot apical meristem specification	IGI	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090421	embryonic meristem initiation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	HCCA
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
MF	GO:0003724	RNA helicase activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0007584	response to nutrient	IEP	HCCA
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	HCCA
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0009560	embryo sac egg cell differentiation	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009594	detection of nutrient	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009740	gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010050	vegetative phase change	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
BP	GO:0010260	obsolete animal organ senescence	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0016262	protein N-acetylglucosaminyltransferase activity	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0035281	pre-miRNA export from nucleus	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048367	shoot system development	IEP	HCCA
BP	GO:0048581	negative regulation of post-embryonic development	IEP	HCCA
BP	GO:0048731	system development	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051093	negative regulation of developmental process	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0051241	negative regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051606	detection of stimulus	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
BP	GO:0080022	primary root development	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:2000242	negative regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	909	942
IPR001680	WD40_repeat	449	483

External Links

No external refs found!

AT3G16830 (TPR2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation