AT3G13920 (TIF4A1, EIF4A1, RH4)

Aliases : TIF4A1, EIF4A1, RH4

Description : eukaryotic translation initiation factor 4A1

Gene families : OG0000532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000532_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13920

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00036p00181640	EIF4A-2,...	Protein biosynthesis.translation initiation.mRNA...	0.03	OrthoFinder output from all 47 species
AT1G54270	EIF4A-2	eif4a-2	0.04	OrthoFinder output from all 47 species
Adi_g054674	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g087856	EIF4A-III	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g10607	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g07229	EIF4A-2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g01779	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.02	OrthoFinder output from all 47 species
Aop_g03471	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene51862.t1	EIF4A-III,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0064.g035634	EIF4A-III	not classified & original description: CDS=274-1275	0.03	OrthoFinder output from all 47 species
Cba_g42587	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.03	OrthoFinder output from all 47 species
Ceric.21G079100.1	EIF4A-2, Ceric.21G079100	mRNA unwinding factor *(eIF4A)) & original description:...	0.09	OrthoFinder output from all 47 species
Dac_g10266	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.04	OrthoFinder output from all 47 species
Mp2g02760.1	EIF4A-2	mRNA unwinding factor (eIF4A)	0.07	OrthoFinder output from all 47 species
Msp_g08580	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.06	OrthoFinder output from all 47 species
Msp_g12910	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g14903	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.02	OrthoFinder output from all 47 species
Pp3c7_3770V3.1	EIF4A-2, Pp3c7_3770	eukaryotic translation initiation factor 4A1	0.03	OrthoFinder output from all 47 species
Pp3s93_30V3.1	EIF4A-2, Pp3s93_30	eukaryotic translation initiation factor 4A1	0.03	OrthoFinder output from all 47 species
Sam_g23496	No alias	mRNA unwinding factor *(eIF4A)) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc08g062800.3.1	EIF4A-2, Solyc08g062800	mRNA unwinding factor (eIF4A)	0.05	OrthoFinder output from all 47 species
Solyc11g033280.2.1	EIF4A-III, Solyc11g033280	helicase component eIF4A3 of RNA quality control Exon...	0.02	OrthoFinder output from all 47 species
Solyc12g095990.2.1	EIF4A-2, Solyc12g095990	mRNA unwinding factor (eIF4A)	0.12	OrthoFinder output from all 47 species
Solyc12g096000.2.1	EIF4A-2, Solyc12g096000	mRNA unwinding factor (eIF4A)	0.07	OrthoFinder output from all 47 species
Spa_g40551	EIF4A-III	helicase component *(eIF4A3) of RNA quality control Exon...	0.03	OrthoFinder output from all 47 species
Tin_g03386	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g05567	EIF4A-2	mRNA unwinding factor *(eIF4A)) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e013175_P002	EIF4A-2, Zm00001e013175	mRNA unwinding factor (eIF4A)	0.04	OrthoFinder output from all 47 species
Zm00001e013648_P002	EIF4A-2, Zm00001e013648	mRNA unwinding factor (eIF4A)	0.02	OrthoFinder output from all 47 species
Zm00001e016284_P001	EIF4A-III, Zm00001e016284	helicase component eIF4A3 of RNA quality control Exon...	0.03	OrthoFinder output from all 47 species
Zm00001e030233_P004	EIF4A-2, Zm00001e030233	mRNA unwinding factor (eIF4A)	0.21	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003743	translation initiation factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006096	glycolytic process	RCA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	None	Extended
BP	GO:0006413	translational initiation	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006757	ATP generation from ADP	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009135	purine nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009185	ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046031	ADP metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
BP	GO:0046939	nucleotide phosphorylation	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	64	225
IPR001650	Helicase_C	265	373

External Links

No external refs found!

AT3G13920 (TIF4A1, EIF4A1, RH4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation