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  5. AT3G13228

AT3G13228


Description : RING/U-box superfamily protein


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G13228

Target Alias Description ECC score Gene Family Method Actions
AT1G18760 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 OrthoFinder output from all 47 species
AT1G18770 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT1G18780 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G21960 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G29840 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT3G60080 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G53910 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g02428 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04983 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene15226.t1 Aspi01Gene15226 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G021600.1 Ceric.01G021600 not classified & original description: pacid=50590743... 0.04 OrthoFinder output from all 47 species
Ceric.16G037300.1 Ceric.16G037300 not classified & original description: pacid=50589925... 0.03 OrthoFinder output from all 47 species
Dac_g21770 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g30061 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01008897001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Gb_22124 No alias E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.04 OrthoFinder output from all 47 species
Lfl_g03286 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Lfl_g27734 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Lfl_g29620 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Msp_g25463 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50355 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Ppi_g30226 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Solyc02g088030.1.1 Solyc02g088030 E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc12g008440.1.1 Solyc12g008440 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g15447 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g07365 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35084 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e016135_P001 Zm00001e016135 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e038273_P001 Zm00001e038273 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0004044 amidophosphoribosyltransferase activity IEP HCCA
BP GO:0006144 purine nucleobase metabolic process IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009113 purine nucleobase biosynthetic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 274 316
No external refs found!