AT3G12500 (HCHIB, B-CHI,...)

Aliases : HCHIB, B-CHI, ATHCHIB, PR-3, PR3, CHI-B

Description : basic chitinase

Gene families : OG0000280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000280_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G12500

Target	Alias	Description	ECC score	Gene Family Method
Aev_g38851	HCHIB, B-CHI,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene32081.t1	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32082.t1	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32099.t1	HCHIB, B-CHI,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene32150.t1	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000746	ATEP3, EP3,...	not classified & original description: CDS=491-1327	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000750	ATEP3, EP3,...	not classified & original description: CDS=1-942	0.02	OrthoFinder output from all 47 species
Dde_g18506	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g04424	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05480	HCHIB, B-CHI,...	basic chitinase *(CHIB) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os01g18400.1	LOC_Os01g18400	Chitinase 10 OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species
LOC_Os03g04060.1	LOC_Os03g04060	Chitinase 11 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os05g33130.1	HCHIB, B-CHI,...	Chitinase 2 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os10g39680.1	HCHIB, B-CHI,...	Chitinase 8 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
MA_295712g0010	ATEP3, EP3,...	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Pnu_g31117	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g32706	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c3_29190V3.1	Pp3c3_29190	Chitinase family protein	0.02	OrthoFinder output from all 47 species
Ppi_g57704	HCHIB, B-CHI,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g60891	HCHIB, B-CHI,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g00455	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g31038	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Smo145836	HCHIB, B-CHI,...	Chitinase 2 OS=Oryza sativa subsp. japonica	0.03	OrthoFinder output from all 47 species
Solyc02g082920.4.1	HCHIB, B-CHI,...	Acidic 26 kDa endochitinase OS=Solanum lycopersicum...	0.06	OrthoFinder output from all 47 species
Solyc02g082930.3.1	HCHIB, B-CHI,...	Acidic 27 kDa endochitinase OS=Solanum lycopersicum...	0.04	OrthoFinder output from all 47 species
Solyc06g053380.3.1	ATEP3, EP3,...	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Solyc10g055800.2.1	HCHIB, B-CHI,...	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	0.04	OrthoFinder output from all 47 species
Solyc10g073353.1.1	Solyc10g073353	Endochitinase A OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Solyc11g020530.3.1	HCHIB, B-CHI,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Zm00001e002252_P001	HCHIB, B-CHI,...	Chitinase 8 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Zm00001e030152_P001	HCHIB, B-CHI,...	Basic endochitinase A OS=Secale cereale...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IDA	Interproscan
MF	GO:0004568	chitinase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	None	Extended
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009871	jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	IGI	Interproscan
BP	GO:0009873	ethylene-activated signaling pathway	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010167	response to nitrate	RCA	Interproscan
BP	GO:0015698	inorganic anion transport	None	Extended
BP	GO:0015706	nitrate transmembrane transport	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050832	defense response to fungus	IDA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0055085	transmembrane transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
BP	GO:0098660	inorganic ion transmembrane transport	None	Extended
BP	GO:0098661	inorganic anion transmembrane transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902025	nitrate import	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	89	320
IPR001002	Chitin-bd_1	35	73

External Links

No external refs found!

AT3G12500 (HCHIB, B-CHI,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation