AT3G09650 (CRM3, HCF152)

Aliases : CRM3, HCF152

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G09650

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00272000	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g03100,...	0.03	OrthoFinder output from all 47 species
AMTR_s00019p00220910	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g03100,...	0.05	OrthoFinder output from all 47 species
AT1G69290	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g075176	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g116314	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g09800	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g11157	CRM3, HCF152	plastidial transcript stability factor *(HCF152) &...	0.03	OrthoFinder output from all 47 species
Ceric.01G012400.1	Ceric.01G012400	not classified & original description: pacid=50592360...	0.03	OrthoFinder output from all 47 species
Dcu_g14031	CRM3, HCF152	plastidial transcript stability factor *(HCF152) &...	0.02	OrthoFinder output from all 47 species
Dde_g09114	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os07g31310.1	LOC_Os07g31310	Pentatricopeptide repeat-containing protein At4g17616...	0.03	OrthoFinder output from all 47 species
Len_g11883	CRM3, HCF152	plastidial transcript stability factor *(HCF152) &...	0.05	OrthoFinder output from all 47 species
MA_46631g0010	No alias	Pentatricopeptide repeat-containing protein At1g69290...	0.03	OrthoFinder output from all 47 species
MA_743669g0010	No alias	Pentatricopeptide repeat-containing protein At1g03100,...	0.03	OrthoFinder output from all 47 species
MA_90791g0010	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	OrthoFinder output from all 47 species
Ore_g10706	CRM3, HCF152	plastidial transcript stability factor *(HCF152) &...	0.02	OrthoFinder output from all 47 species
Ore_g33799	CRM3, HCF152	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo105057	LOI1, MEF11	Pentatricopeptide repeat-containing protein At4g14850...	0.03	OrthoFinder output from all 47 species
Smo105853	No alias	Pentatricopeptide repeat-containing protein At3g09650,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000023	maltose metabolic process	RCA	Interproscan
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0005982	starch metabolic process	None	Extended
BP	GO:0005984	disaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IMP	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009311	oligosaccharide metabolic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019252	starch biosynthetic process	RCA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	294	336
IPR002885	Pentatricopeptide_repeat	448	478
IPR002885	Pentatricopeptide_repeat	416	442
IPR002885	Pentatricopeptide_repeat	559	585
IPR002885	Pentatricopeptide_repeat	234	282
IPR002885	Pentatricopeptide_repeat	593	639
IPR002885	Pentatricopeptide_repeat	486	533

External Links

No external refs found!

AT3G09650 (CRM3, HCF152)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation