AT3G09630

Description : Ribosomal protein L4/L1 family

Gene families : OG0002398 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002398_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G09630

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00023p00210590	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder output from all 47 species
AMTR_s00105p00023120	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Adi_g098159	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g04598	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g04140	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Als_g19062	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aob_g11621	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g28941	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g12528	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Cba_g00851	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.07G041200.1	Ceric.07G041200	component *(uL4) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Ceric.18G033500.1	Ceric.18G033500	component *(uL4) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00022075.53	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	OrthoFinder output from all 47 species
Cre09.g397697	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.22	OrthoFinder output from all 47 species
Dac_g17142	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Dcu_g06226	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g25869	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dde_g12036	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
GSVIVT01025547001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.12	OrthoFinder output from all 47 species
Gb_00290	No alias	component RPL4 of LSU proteome component	0.02	OrthoFinder output from all 47 species
Gb_21884	No alias	component RPL4 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Gb_21885	No alias	component RPL4 of LSU proteome component	0.04	OrthoFinder output from all 47 species
LOC_Os03g58204.1	LOC_Os03g58204	component RPL4 of LSU proteome component	0.24	OrthoFinder output from all 47 species
LOC_Os07g08330.1	LOC_Os07g08330	component RPL4 of LSU proteome component	0.25	OrthoFinder output from all 47 species
Len_g18811	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Len_g22033	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g29160	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
MA_9991417g0010	No alias	component RPL4 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Mp4g20310.1	No alias	component RPL4 of LSU proteome component	0.27	OrthoFinder output from all 47 species
Msp_g01521	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Nbi_g16964	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Ore_g14115	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g38027	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g17839	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c23_9380V3.1	Pp3c23_9380	Ribosomal protein L4/L1 family	0.05	OrthoFinder output from all 47 species
Ppi_g08865	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g32222	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008375	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sam_g13131	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g13132	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Sam_g25486	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Smo166994	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc09g007250.4.1	Solyc09g007250	component RPL4 of LSU proteome component	0.27	OrthoFinder output from all 47 species
Solyc10g084350.2.1	Solyc10g084350	component RPL4 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Solyc10g086010.2.1	Solyc10g086010	component RPL4 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Spa_g04220	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Spa_g43372	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Tin_g14297	No alias	component *(uL4) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Zm00001e005988_P001	Zm00001e005988	component RPL4 of LSU proteome component	0.18	OrthoFinder output from all 47 species
Zm00001e011456_P002	Zm00001e011456	component RPL4 of LSU proteome component	0.15	OrthoFinder output from all 47 species
Zm00001e011869_P001	Zm00001e011869	component RPL4 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Zm00001e032938_P001	Zm00001e032938	component RPL4 of LSU proteome component	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005773	vacuole	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006220	pyrimidine nucleotide metabolic process	None	Extended
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	None	Extended
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	RCA	Interproscan
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
BP	GO:0010476	gibberellin mediated signaling pathway	IEP	HCCA
CC	GO:0015030	Cajal body	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025755	Ribos_L4_C_dom	281	354
IPR002136	Ribosomal_L4/L1e	29	268

External Links

No external refs found!

AT3G09630

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation