AT3G08940 (LHCB4.2)

Aliases : LHCB4.2

Description : light harvesting complex photosystem II

Gene families : OG0003968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003968_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G08940
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00239610	LHCB4.2,...	Photosynthesis.photophosphorylation.photosystem...	0.14	OrthoFinder output from all 47 species
Adi_g047687	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.16	OrthoFinder output from all 47 species
Adi_g079332	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.12	OrthoFinder output from all 47 species
Aev_g13668	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.11	OrthoFinder output from all 47 species
Ala_g11240	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.14	OrthoFinder output from all 47 species
Als_g08280	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.12	OrthoFinder output from all 47 species
Aob_g39718	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.11	OrthoFinder output from all 47 species
Aop_g05395	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.11	OrthoFinder output from all 47 species
Aop_g05396	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.12	OrthoFinder output from all 47 species
Aspi01Gene47726.t1	LHCB4.1, Aspi01Gene47726	component *(LHCb4) of LHC-II complex & original description: none	0.06	OrthoFinder output from all 47 species
Azfi_s0173.g055756	LHCB4.2	component *(LHCb4) of LHC-II complex & original...	0.06	OrthoFinder output from all 47 species
Cba_g11090	No alias	component *(LHCb4) of LHC-II complex & original description: none	0.09	OrthoFinder output from all 47 species
Cba_g34516	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.05G075200.1	LHCB4.2, Ceric.05G075200	component *(LHCb4) of LHC-II complex & original...	0.2	OrthoFinder output from all 47 species
Ceric.22G069400.1	LHCB4.1, Ceric.22G069400	component *(LHCb4) of LHC-II complex & original...	0.18	OrthoFinder output from all 47 species
Cre17.g720250	LHCB4.3	Photosynthesis.photophosphorylation.photosystem...	0.15	OrthoFinder output from all 47 species
Dac_g23809	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.13	OrthoFinder output from all 47 species
Dcu_g45560	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.09	OrthoFinder output from all 47 species
Dcu_g49585	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.26	OrthoFinder output from all 47 species
Dde_g10605	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.09	OrthoFinder output from all 47 species
Ehy_g03348	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.09	OrthoFinder output from all 47 species
Ehy_g21710	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Gb_13368	LHCB4.3	component LHCb4 of LHC-II complex	0.04	OrthoFinder output from all 47 species
Gb_38595	LHCB4.1	component LHCb4 of LHC-II complex	0.12	OrthoFinder output from all 47 species
LOC_Os07g37240.1	LHCB4.1, LOC_Os07g37240	component LHCb4 of LHC-II complex	0.2	OrthoFinder output from all 47 species
Len_g31128	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.09	OrthoFinder output from all 47 species
Len_g34078	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.04	OrthoFinder output from all 47 species
MA_129206g0010	LHCB4.2	component LHCb4 of LHC-II complex	0.14	OrthoFinder output from all 47 species
Mp1g16850.1	LHCB4.1	component LHCb4 of LHC-II complex	0.21	OrthoFinder output from all 47 species
Msp_g07941	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.1	OrthoFinder output from all 47 species
Nbi_g01855	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.15	OrthoFinder output from all 47 species
Pir_g15460	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g33035	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.07	OrthoFinder output from all 47 species
Pp3c12_25460V3.1	LHCB4.1, Pp3c12_25460	light harvesting complex photosystem II	0.13	OrthoFinder output from all 47 species
Ppi_g08836	LHCB4.3	component *(LHCb4) of LHC-II complex & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g15010	LHCB4.2	component *(LHCb4) of LHC-II complex & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016319	LHCB4.1	component *(LHCb4) of LHC-II complex & original...	0.04	OrthoFinder output from all 47 species
Smo149722	LHCB4.2	Photosynthesis.photophosphorylation.photosystem...	0.13	OrthoFinder output from all 47 species
Solyc09g014520.3.1	LHCB4.1, Solyc09g014520	component LHCb4 of LHC-II complex	0.23	OrthoFinder output from all 47 species
Spa_g08357	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g50929	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.1	OrthoFinder output from all 47 species
Spa_g50931	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.08	OrthoFinder output from all 47 species
Tin_g08576	LHCB4.1	component *(LHCb4) of LHC-II complex & original description: none	0.11	OrthoFinder output from all 47 species
Zm00001e010547_P001	LHCB4.1, Zm00001e010547	component LHCb4 of LHC-II complex	0.2	OrthoFinder output from all 47 species
Zm00001e035235_P001	LHCB4.1, Zm00001e035235	component LHCb4 of LHC-II complex	0.19	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006534	cysteine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009070	serine family amino acid biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009535	chloroplast thylakoid membrane	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009637	response to blue light	IEP	Interproscan
BP	GO:0009637	response to blue light	RCA	Interproscan
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009642	response to light intensity	None	Extended
BP	GO:0009644	response to high light intensity	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009743	response to carbohydrate	None	Extended
BP	GO:0009744	response to sucrose	RCA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010114	response to red light	IEP	Interproscan
BP	GO:0010114	response to red light	RCA	Interproscan
BP	GO:0010155	regulation of proton transport	RCA	Interproscan
BP	GO:0010218	response to far red light	IEP	Interproscan
BP	GO:0010218	response to far red light	RCA	Interproscan
BP	GO:0015979	photosynthesis	RCA	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016168	chlorophyll binding	ISS	Interproscan
BP	GO:0019220	regulation of phosphate metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019344	cysteine biosynthetic process	RCA	Interproscan
BP	GO:0019684	photosynthesis, light reaction	RCA	Interproscan
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0019867	outer membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031968	organelle outer membrane	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0034285	response to disaccharide	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0034762	regulation of transmembrane transport	None	Extended
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	None	Extended
BP	GO:0035303	regulation of dephosphorylation	None	Extended
BP	GO:0035304	regulation of protein dephosphorylation	RCA	Interproscan
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043269	regulation of monoatomic ion transport	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051174	regulation of phosphorus metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006873	cellular monoatomic ion homeostasis	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
CC	GO:0009503	thylakoid light-harvesting complex	IEP	HCCA
CC	GO:0009517	PSII associated light-harvesting complex II	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009533	chloroplast stromal thylakoid	IEP	HCCA
CC	GO:0009538	photosystem I reaction center	IEP	HCCA
CC	GO:0009543	chloroplast thylakoid lumen	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0009765	photosynthesis, light harvesting	IEP	HCCA
BP	GO:0009768	photosynthesis, light harvesting in photosystem I	IEP	HCCA
BP	GO:0009769	photosynthesis, light harvesting in photosystem II	IEP	HCCA
CC	GO:0009782	photosystem I antenna complex	IEP	HCCA
CC	GO:0009783	photosystem II antenna complex	IEP	HCCA
BP	GO:0010193	response to ozone	IEP	HCCA
BP	GO:0010196	nonphotochemical quenching	IEP	HCCA
CC	GO:0010287	plastoglobule	IEP	HCCA
BP	GO:0017014	protein nitrosylation	IEP	HCCA
BP	GO:0017038	protein import	IEP	HCCA
BP	GO:0018119	peptidyl-cysteine S-nitrosylation	IEP	HCCA
BP	GO:0018198	peptidyl-cysteine modification	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0030003	cellular monoatomic cation homeostasis	IEP	HCCA
CC	GO:0030076	light-harvesting complex	IEP	HCCA
CC	GO:0030095	chloroplast photosystem II	IEP	HCCA
CC	GO:0031977	thylakoid lumen	IEP	HCCA
CC	GO:0031978	plastid thylakoid lumen	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0045038	protein import into chloroplast thylakoid membrane	IEP	HCCA
MF	GO:0046406	magnesium protoporphyrin IX methyltransferase activity	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0048878	chemical homeostasis	IEP	HCCA
BP	GO:0050801	monoatomic ion homeostasis	IEP	HCCA
BP	GO:0055080	monoatomic cation homeostasis	IEP	HCCA
BP	GO:0055082	cellular chemical homeostasis	IEP	HCCA
CC	GO:0080085	signal recognition particle, chloroplast targeting	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098807	chloroplast thylakoid membrane protein complex	IEP	HCCA
BP	GO:1990066	energy quenching	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022796	Chloroa_b-bind	62	177

External Links

No external refs found!

AT3G08940 (LHCB4.2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation