AT3G07840

Description : Pectin lyase-like superfamily protein

Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G07840

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00270640	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	OrthoFinder output from all 47 species
AT3G07850	No alias	Pectin lyase-like superfamily protein	0.05	OrthoFinder output from all 47 species
AT3G14040	No alias	Pectin lyase-like superfamily protein	0.05	OrthoFinder output from all 47 species
GSVIVT01028044001	PGA4	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01030017001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.03	OrthoFinder output from all 47 species
GSVIVT01030023001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.04	OrthoFinder output from all 47 species
GSVIVT01030030001	No alias	Polygalacturonase OS=Gossypium hirsutum	0.03	OrthoFinder output from all 47 species
GSVIVT01035103001	No alias	Exopolygalacturonase (Fragment) OS=Platanus acerifolia	0.03	OrthoFinder output from all 47 species
LOC_Os02g10300.1	LOC_Os02g10300	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.05	OrthoFinder output from all 47 species
LOC_Os06g35320.1	LOC_Os06g35320	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.02	OrthoFinder output from all 47 species
Solyc01g066070.3.1	Solyc01g066070	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.03	OrthoFinder output from all 47 species
Solyc06g009200.3.1	PGA4, Solyc06g009200	Polygalacturonase OS=Nicotiana tabacum...	0.02	OrthoFinder output from all 47 species
Solyc07g044870.4.1	Solyc07g044870	Polygalacturonase OS=Nicotiana tabacum...	0.02	OrthoFinder output from all 47 species
Zm00001e002846_P002	Zm00001e002846	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.02	OrthoFinder output from all 47 species
Zm00001e022246_P002	Zm00001e022246	Exopolygalacturonase (Fragment) OS=Platanus acerifolia...	0.02	OrthoFinder output from all 47 species
Zm00001e026354_P001	Zm00001e026354	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e030524_P001	Zm00001e030524	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030525_P001	Zm00001e030525	Exopolygalacturonase OS=Zea mays (sp\|p35339\|pglr3_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030528_P001	Zm00001e030528	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030530_P001	Zm00001e030530	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030532_P001	Zm00001e030532	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize : 345.0)	0.03	OrthoFinder output from all 47 species
Zm00001e030533_P001	Zm00001e030533	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030534_P001	Zm00001e030534	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030535_P001	Zm00001e030535	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030537_P001	Zm00001e030537	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	OrthoFinder output from all 47 species
Zm00001e030542_P001	Zm00001e030542	Exopolygalacturonase OS=Zea mays (sp\|p35338\|pglr2_maize...	0.03	OrthoFinder output from all 47 species
Zm00001e042494_P001	Zm00001e042494	Exopolygalacturonase OS=Zea mays (sp\|p26216\|pglr1_maize...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009827	plant-type cell wall modification	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	48	375

External Links

No external refs found!

AT3G07840

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation