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  5. AT3G07540

AT3G07540


Description : Actin-binding FH2 (formin homology 2) family protein


Gene families : OG0001137 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001137_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G07540

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00097480 evm_27.TU.AmTr_v1... Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
AT3G25500 AHF1, FH1, AFH1, ATFH1 formin homology 1 0.04 OrthoFinder output from all 47 species
Azfi_s0030.g024409 FH6, ATFH6 group-I formin actin filament elongation factor &... 0.03 OrthoFinder output from all 47 species
Dcu_g04990 ATFH5, Fh5 group-I formin actin filament elongation factor &... 0.03 OrthoFinder output from all 47 species
Ehy_g01646 No alias group-I formin actin filament elongation factor &... 0.03 OrthoFinder output from all 47 species
Ehy_g10525 AHF1, FH1, AFH1, ATFH1 group-I formin actin filament elongation factor &... 0.02 OrthoFinder output from all 47 species
GSVIVT01038194001 No alias Cytoskeleton.microfilament network.actin... 0.04 OrthoFinder output from all 47 species
LOC_Os01g67240.1 AHF1, FH1, AFH1,... group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
LOC_Os02g50570.1 ATFH8, FH8,... group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
LOC_Os04g38810.1 LOC_Os04g38810 group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
LOC_Os07g36150.1 ATFH5, Fh5,... group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
LOC_Os09g34180.1 AHF1, FH1, AFH1,... group-I formin actin filament elongation factor 0.08 OrthoFinder output from all 47 species
LOC_Os10g20710.1 FH6, ATFH6,... group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
Pir_g45335 FH6, ATFH6 group-I formin actin filament elongation factor &... 0.03 OrthoFinder output from all 47 species
Ppi_g56831 AHF1, FH1, AFH1, ATFH1 group-I formin actin filament elongation factor &... 0.02 OrthoFinder output from all 47 species
Sam_g03974 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g092470.3.1 FH6, ATFH6,... group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
Solyc12g019480.3.1 AHF1, FH1, AFH1,... group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
Tin_g45441 FH6, ATFH6 group-I formin acTin filament elongation factor &... 0.02 OrthoFinder output from all 47 species
Zm00001e007899_P001 Zm00001e007899 group-I formin actin filament elongation factor 0.03 OrthoFinder output from all 47 species
Zm00001e012597_P001 FH6, ATFH6,... group-I formin actin filament elongation factor 0.05 OrthoFinder output from all 47 species
Zm00001e015771_P001 ATFH8, FH8,... group-I formin actin filament elongation factor 0.04 OrthoFinder output from all 47 species
Zm00001e028560_P002 AHF1, FH1, AFH1,... group-I formin actin filament elongation factor 0.05 OrthoFinder output from all 47 species
Zm00001e038766_P001 FH6, ATFH6,... group-I formin actin filament elongation factor 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003779 actin binding ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0009855 determination of bilateral symmetry RCA Interproscan
BP GO:0009887 animal organ morphogenesis RCA Interproscan
BP GO:0009944 polarity specification of adaxial/abaxial axis RCA Interproscan
BP GO:0010014 meristem initiation RCA Interproscan
BP GO:0010051 xylem and phloem pattern formation RCA Interproscan
BP GO:0010073 meristem maintenance RCA Interproscan
BP GO:0048439 flower morphogenesis RCA Interproscan
BP GO:0048519 negative regulation of biological process RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP HCCA
BP GO:0003008 system process IEP HCCA
BP GO:0003013 circulatory system process IEP HCCA
BP GO:0003018 vascular process in circulatory system IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006555 methionine metabolic process IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009086 methionine biosynthetic process IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009914 hormone transport IEP HCCA
BP GO:0009926 auxin polar transport IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010015 root morphogenesis IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0010087 phloem or xylem histogenesis IEP HCCA
BP GO:0010088 phloem development IEP HCCA
BP GO:0010232 vascular transport IEP HCCA
BP GO:0010233 phloem transport IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010588 cotyledon vascular tissue pattern formation IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0016324 apical plasma membrane IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0022622 root system development IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0060918 auxin transport IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
CC GO:0098590 plasma membrane region IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
InterPro domains Description Start Stop
IPR015425 FH2_Formin 470 827
No external refs found!