AT3G07330 (CSLC6, ATCSLC06,...)

Aliases : CSLC6, ATCSLC06, ATCSLC6, CSLC06

Description : Cellulose-synthase-like C6

Gene families : OG0000269 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000269_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G07330

Target	Alias	Description	ECC score	Gene Family Method
Adi_g006848	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g023673	ATCSLC05,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g032524	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g079715	ATCSLC12, CSLC12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g085019	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g18146	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03791	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16073	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g06934	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.03G021900.1	ATCSLC05,...	EC_2.4 glycosyltransferase & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g01632	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g18038	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03846	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016135001	ATCSLC05,...	Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type...	0.03	OrthoFinder output from all 47 species
Gb_21966	ATCSLA9, RAT4,...	mannan synthase (CSLA)	0.02	OrthoFinder output from all 47 species
Gb_28041	ATCSLA9, RAT4,...	Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g20173	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g09459	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g09617	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
MA_10426467g0020	ATCSLA9, RAT4,...	Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_96942g0010	ATCSLA9, RAT4,...	mannan synthase (CSLA)	0.03	OrthoFinder output from all 47 species
Nbi_g06772	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g01004	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000032	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: CDS=377-2032	0.02	OrthoFinder output from all 47 species
Sam_g26243	No alias	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Smo230176	ATCSLA9, RAT4,...	Cell wall.hemicellulose.heteromannan.synthesis.mannan...	0.02	OrthoFinder output from all 47 species
Solyc09g057640.4.1	CSLC6, ATCSLC06,...	1,4-beta-glucan synthase (CSLC)	0.03	OrthoFinder output from all 47 species
Solyc11g066820.2.1	CSLA02, ATCSLA2,...	mannan synthase (CSLA)	0.04	OrthoFinder output from all 47 species
Spa_g25929	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g48005	ATCSLA9, RAT4,...	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g14262	ATCSLC05,...	EC_2.4 glycosyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e019706_P002	ATCSLC12,...	1,4-beta-glucan synthase (CSLC)	0.04	OrthoFinder output from all 47 species
Zm00001e021557_P001	ATCSLC05,...	1,4-beta-glucan synthase (CSLC)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009932	cell tip growth	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	RCA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	ISS	Interproscan
MF	GO:0016758	hexosyltransferase activity	None	Extended
MF	GO:0016759	cellulose synthase activity	ISS	Interproscan
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030243	cellulose metabolic process	RCA	Interproscan
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048868	pollen tube development	IMP	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004478	methionine adenosyltransferase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005881	cytoplasmic microtubule	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006556	S-adenosylmethionine biosynthetic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
BP	GO:0046500	S-adenosylmethionine metabolic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
CC	GO:0055028	cortical microtubule	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001173	Glyco_trans_2-like	315	509

External Links

No external refs found!

AT3G07330 (CSLC6, ATCSLC06,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation