AT3G06300 (AT-P4H-2)

Aliases : AT-P4H-2

Description : P4H isoform 2

Gene families : OG0000256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000256_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G06300

Target	Alias	Description	ECC score	Gene Family Method
Adi_g040529	No alias	prolyl hydroxylase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07639	No alias	prolyl hydroxylase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g11619	No alias	prolyl hydroxylase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g46916	No alias	prolyl hydroxylase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g12255	No alias	prolyl hydroxylase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.02G075100.1	Ceric.02G075100	prolyl hydroxylase & original description:...	0.03	OrthoFinder output from all 47 species
Cre02.g081600	AT-P4H-1	Protein modification.hydroxylation.prolyl hydroxylase	0.03	OrthoFinder output from all 47 species
Cre10.g424900	No alias	Protein modification.hydroxylation.prolyl hydroxylase	0.05	OrthoFinder output from all 47 species
Cre14.g626200	No alias	Protein modification.hydroxylation.prolyl hydroxylase	0.05	OrthoFinder output from all 47 species
Dcu_g01241	No alias	prolyl hydroxylase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04714	No alias	prolyl hydroxylase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g23071	AT-P4H-1	prolyl hydroxylase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g07920.1	LOC_Os01g07920	prolyl hydroxylase	0.02	OrthoFinder output from all 47 species
LOC_Os05g41010.1	LOC_Os05g41010	prolyl hydroxylase	0.04	OrthoFinder output from all 47 species
Nbi_g12127	No alias	prolyl hydroxylase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g05640	No alias	prolyl hydroxylase & original description: none	0.03	OrthoFinder output from all 47 species
Smo174666	No alias	Protein modification.hydroxylation.prolyl hydroxylase	0.06	OrthoFinder output from all 47 species
Smo411114	No alias	Protein modification.hydroxylation.prolyl hydroxylase	0.02	OrthoFinder output from all 47 species
Solyc01g080530.3.1	Solyc01g080530	prolyl hydroxylase	0.03	OrthoFinder output from all 47 species
Solyc02g064750.4.1	Solyc02g064750	prolyl hydroxylase	0.03	OrthoFinder output from all 47 species
Solyc03g033320.4.1	Solyc03g033320	prolyl hydroxylase	0.05	OrthoFinder output from all 47 species
Solyc06g054490.3.1	Solyc06g054490	prolyl hydroxylase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004656	procollagen-proline 4-dioxygenase activity	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009627	systemic acquired resistance	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	ISS	Interproscan
BP	GO:0018126	protein hydroxylation	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018208	peptidyl-proline modification	None	Extended
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IDA	Interproscan
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	ISS	Interproscan
BP	GO:0019511	peptidyl-proline hydroxylation	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019798	procollagen-proline dioxygenase activity	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
MF	GO:0031543	peptidyl-proline dioxygenase activity	None	Extended
MF	GO:0031545	peptidyl-proline 4-dioxygenase activity	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034976	response to endoplasmic reticulum stress	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0048468	cell development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051213	dioxygenase activity	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080147	root hair cell development	IMP	Interproscan
CC	GO:0097708	intracellular vesicle	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0003979	UDP-glucose 6-dehydrogenase activity	IEP	HCCA
MF	GO:0004615	phosphomannomutase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006013	mannose metabolic process	IEP	HCCA
BP	GO:0006065	UDP-glucuronate biosynthetic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009787	regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009788	negative regulation of abscisic acid-activated signaling pathway	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
BP	GO:0016093	polyprenol metabolic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016487	farnesol metabolic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019307	mannose biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0019852	L-ascorbic acid metabolic process	IEP	HCCA
BP	GO:0019853	L-ascorbic acid biosynthetic process	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
MF	GO:0030775	glucuronoxylan 4-O-methyltransferase activity	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042350	GDP-L-fucose biosynthetic process	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
BP	GO:0046368	GDP-L-fucose metabolic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0046398	UDP-glucuronate metabolic process	IEP	HCCA
MF	GO:0047886	farnesol dehydrogenase activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901334	lactone metabolic process	IEP	HCCA
BP	GO:1901336	lactone biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901419	regulation of response to alcohol	IEP	HCCA
BP	GO:1901420	negative regulation of response to alcohol	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
BP	GO:1905957	regulation of cellular response to alcohol	IEP	HCCA
BP	GO:1905958	negative regulation of cellular response to alcohol	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005123	Oxoglu/Fe-dep_dioxygenase	125	245

External Links

No external refs found!

AT3G06300 (AT-P4H-2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation