AT3G05560

Description : Ribosomal L22e protein family

Gene families : OG0000996 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000996_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G05560

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00189250	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Adi_g012188	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g012189	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Adi_g062074	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Adi_g077282	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Adi_g103620	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g124335	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aev_g03619	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g11886	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Ala_g18322	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Als_g03478	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g19592	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g24279	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Als_g38432	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Als_g38436	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Aob_g00408	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Aob_g15050	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g10541	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Aop_g22540	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Aop_g22620	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g24260	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g51812	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene38161.t1	Aspi01Gene38161	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aspi01Gene72593.t1	Aspi01Gene72593	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0003.g007793	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Azfi_s0005.g009357	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Cba_g21293	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Cba_g49596	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.08G045600.1	Ceric.08G045600	component *(eL22) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Ceric.26G014800.1	Ceric.26G014800	component *(eL22) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.7	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.27	OrthoFinder output from all 47 species
Cre07.g357850	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.4	OrthoFinder output from all 47 species
Dac_g04863	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Dac_g14500	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dac_g27123	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Dcu_g18517	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Dcu_g27968	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g03143	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01028021001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	OrthoFinder output from all 47 species
GSVIVT01031130001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.36	OrthoFinder output from all 47 species
GSVIVT01031158001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.3	OrthoFinder output from all 47 species
GSVIVT01035141001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.3	OrthoFinder output from all 47 species
Gb_08874	No alias	component RPL22 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Gb_36164	No alias	component RPL22 of LSU proteome component	0.25	OrthoFinder output from all 47 species
LOC_Os03g22340.1	LOC_Os03g22340	component RPL22 of LSU proteome component	0.4	OrthoFinder output from all 47 species
LOC_Os07g47710.1	LOC_Os07g47710	component RPL22 of LSU proteome component	0.31	OrthoFinder output from all 47 species
Len_g02014	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Len_g02481	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g31513	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
MA_130453g0010	No alias	component RPL22 of LSU proteome component	0.24	OrthoFinder output from all 47 species
Mp4g02920.1	No alias	component RPL22 of LSU proteome component	0.51	OrthoFinder output from all 47 species
Msp_g03306	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Msp_g20028	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g03911	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Pir_g40025	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Pp3c11_630V3.1	Pp3c11_630	Ribosomal L22e protein family	0.16	OrthoFinder output from all 47 species
Pp3c16_17710V3.1	Pp3c16_17710	Ribosomal L22e protein family	0.02	OrthoFinder output from all 47 species
Pp3c1_120V3.1	Pp3c1_120	Ribosomal L22e protein family	0.22	OrthoFinder output from all 47 species
Pp3c2_28500V3.1	Pp3c2_28500	Ribosomal L22e protein family	0.29	OrthoFinder output from all 47 species
Pp3c2_28510V3.1	Pp3c2_28510	Ribosomal L22e protein family	0.29	OrthoFinder output from all 47 species
Pp3c7_27030V3.1	Pp3c7_27030	Ribosomal L22e protein family	0.09	OrthoFinder output from all 47 species
Ppi_g23306	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g23657	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g24808	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Ppi_g33837	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g38125	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025519	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sam_g13723	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g13724	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sam_g30822	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Sam_g32149	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g32393	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g41282	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g46506	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g46507	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g47525	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Smo270704	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder output from all 47 species
Solyc01g099830.3.1	Solyc01g099830	component RPL22 of LSU proteome component	0.43	OrthoFinder output from all 47 species
Solyc09g075150.3.1	Solyc09g075150	component RPL22 of LSU proteome component	0.13	OrthoFinder output from all 47 species
Solyc09g075155.1.1	Solyc09g075155	component RPL22 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Spa_g05462	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g14668	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Spa_g22846	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Spa_g25050	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g33994	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g42689	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Tin_g36488	No alias	component *(eL22) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Zm00001e010958_P001	Zm00001e010958	component RPL22 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Zm00001e035835_P001	Zm00001e035835	component RPL22 of LSU proteome component	0.35	OrthoFinder output from all 47 species
Zm00001e038221_P001	Zm00001e038221	component RPL22 of LSU proteome component	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0009965	leaf morphogenesis	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002671	Ribosomal_L22e	14	122

External Links

No external refs found!

AT3G05560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation