AT3G04870 (PDE181, ZDS, SPC1)

Aliases : PDE181, ZDS, SPC1

Description : zeta-carotene desaturase

Gene families : OG0004455 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004455_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04870

Target	Alias	Description	ECC score	Gene Family Method
Adi_g057493	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g08309	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.04	OrthoFinder output from all 47 species
Cre07.g314150	PDE181, ZDS, SPC1	Secondary metabolism.terpenoids.terpenoid...	0.01	OrthoFinder output from all 47 species
Dac_g43255	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g13728	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g31655	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.07	OrthoFinder output from all 47 species
Len_g45433	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05500	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g07998	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g13720	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g25901	No alias	zeta-carotene desaturase *(ZDS) & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g19386	PDE181, ZDS, SPC1	zeta-carotene desaturase *(ZDS) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016119	carotene metabolic process	None	Extended
BP	GO:0016120	carotene biosynthetic process	IDA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016719	carotene 7,8-desaturase activity	IDA	Interproscan
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0042214	terpene metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0046246	terpene biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
MF	GO:0008453	alanine-glyoxylate transaminase activity	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009658	chloroplast organization	IEP	HCCA
BP	GO:0009668	plastid membrane organization	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0009902	chloroplast relocation	IEP	HCCA
BP	GO:0010027	thylakoid membrane organization	IEP	HCCA
BP	GO:0010207	photosystem II assembly	IEP	HCCA
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
BP	GO:0019220	regulation of phosphate metabolic process	IEP	HCCA
BP	GO:0019684	photosynthesis, light reaction	IEP	HCCA
BP	GO:0019750	chloroplast localization	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
BP	GO:0031399	regulation of protein modification process	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
CC	GO:0042170	plastid membrane	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
BP	GO:0042793	plastid transcription	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	HCCA
MF	GO:0047958	glycine:2-oxoglutarate aminotransferase activity	IEP	HCCA
BP	GO:0051174	regulation of phosphorus metabolic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051640	organelle localization	IEP	HCCA
BP	GO:0051644	plastid localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051656	establishment of organelle localization	IEP	HCCA
BP	GO:0051667	establishment of plastid localization	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002937	Amino_oxidase	66	530

External Links

No external refs found!

AT3G04870 (PDE181, ZDS, SPC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation