AT3G04670 (WRKY39, ATWRKY39)

Aliases : WRKY39, ATWRKY39

Description : WRKY DNA-binding protein 39

Gene families : OG0000132 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000132_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04670

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264880	WRKY74,...	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
AMTR_s00045p00165950	MEE24, AtWRKY35,...	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
Adi_g054269	WRKY21	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g056223	WRKY21	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g02296	MEE24, AtWRKY35, WRKY35	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g08379	WRKY21	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g42336	WRKY21	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g06206	MEE24, AtWRKY35, WRKY35	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene42476.t1	WRKY39,...	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g05836	ATWRKY11, WRKY11	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g22948	MEE24, AtWRKY35, WRKY35	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G053600.1	MEE24, AtWRKY35,...	WRKY-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.04G083300.1	WRKY74,...	WRKY-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.07G043400.1	ATWRKY11,...	WRKY-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
GSVIVT01021765001	WRKY14, AR411, ATWRKY14	RNA biosynthesis.transcriptional activation.WRKY...	0.05	OrthoFinder output from all 47 species
Gb_16513	WRKY21	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
LOC_Os04g21950.1	ATWRKY11,...	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
LOC_Os04g50920.1	MEE24, AtWRKY35,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
LOC_Os04g51560.1	ATWRKY11,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
MA_136551g0010	ATWRKY65, WRKY65	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Nbi_g11340	WRKY21	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g19981	ATWRKY11, WRKY11	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g66210	WRKY21	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g08013	ATWRKY7, WRKY7	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g20362	WRKY14, AR411, ATWRKY14	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0302.g027199	MEE24, AtWRKY35, WRKY35	WRKY-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Sam_g40202	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g49699	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g079360.4.1	MEE24, AtWRKY35,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Spa_g18969	WRKY21	WRKY-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g24251	WRKY14, AR411, ATWRKY14	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g49223	WRKY21	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g55003	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g12364	MEE24, AtWRKY35, WRKY35	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g37435	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003146_P002	WRKY74,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Zm00001e005078_P002	WRKY74,...	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species
Zm00001e029049_P001	ATWRKY65,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005516	calmodulin binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005634	nucleus	IC	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
MF	GO:0005484	SNAP receptor activity	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009736	cytokinin-activated signaling pathway	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR018872	Zn-cluster-dom	222	259
IPR003657	WRKY_dom	263	319

External Links

No external refs found!

AT3G04670 (WRKY39, ATWRKY39)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation