AT3G04400 (emb2171)

Aliases : emb2171

Description : Ribosomal protein L14p/L23e family protein

Gene families : OG0001634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001634_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G04400
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00067p00206470	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.21	OrthoFinder output from all 47 species
Adi_g005220	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Adi_g048509	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Adi_g082409	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g129527	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g31836	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g00489	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ala_g22432	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.24	OrthoFinder output from all 47 species
Als_g07889	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Als_g31467	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Als_g31468	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Als_g57360	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g05420	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aop_g04807	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Aop_g30194	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Azfi_s0018.g014977	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Azfi_s0509.g074710	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Cba_g10389	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.06G080000.1	Ceric.06G080000	component *(uL14) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.06G080100.1	Ceric.06G080100	component *(uL14) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Ceric.14G092400.1	Ceric.14G092400	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021290.9	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	OrthoFinder output from all 47 species
Cre04.g211800	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.37	OrthoFinder output from all 47 species
Dac_g25948	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Dac_g34723	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Dcu_g12677	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g45777	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Dde_g03654	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g04154	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g04126	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
GSVIVT01027905001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	OrthoFinder output from all 47 species
GSVIVT01028407001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.42	OrthoFinder output from all 47 species
Gb_21541	No alias	component RPL23 of LSU proteome component	0.25	OrthoFinder output from all 47 species
LOC_Os02g56960.1	LOC_Os02g56960	component RPL23 of LSU proteome component	0.36	OrthoFinder output from all 47 species
LOC_Os03g04590.1	LOC_Os03g04590	component RPL23 of LSU proteome component	0.36	OrthoFinder output from all 47 species
LOC_Os10g32920.1	LOC_Os10g32920	component RPL23 of LSU proteome component	0.38	OrthoFinder output from all 47 species
Len_g18420	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Len_g49503	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Len_g49504	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Lfl_g31545	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Lfl_g38549	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
MA_10432200g0010	No alias	component RPL23 of LSU proteome component	0.42	OrthoFinder output from all 47 species
MA_950121g0010	No alias	component RPL23 of LSU proteome component	0.05	OrthoFinder output from all 47 species
Mp6g14310.1	No alias	component RPL23 of LSU proteome component	0.22	OrthoFinder output from all 47 species
Msp_g22572	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Nbi_g20041	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Nbi_g37801	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Ore_g17886	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ore_g17887	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g06386	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c23_4520V3.1	Pp3c23_4520	Ribosomal protein L14p/L23e family protein	0.01	OrthoFinder output from all 47 species
Pp3c27_860V3.1	Pp3c27_860	Ribosomal protein L14p/L23e family protein	0.17	OrthoFinder output from all 47 species
Ppi_g01624	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g11756	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015442	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Sacu_v1.1_s0070.g016759	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sam_g11546	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g47118	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Smo165708	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.19	OrthoFinder output from all 47 species
Solyc06g008170.3.1	Solyc06g008170	component RPL23 of LSU proteome component	0.36	OrthoFinder output from all 47 species
Solyc06g083780.3.1	Solyc06g083780	component RPL23 of LSU proteome component	0.44	OrthoFinder output from all 47 species
Solyc09g072865.1.1	Solyc09g072865	component RPL23 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Solyc09g090610.3.1	Solyc09g090610	component RPL23 of LSU proteome component	0.23	OrthoFinder output from all 47 species
Spa_g08149	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Spa_g17111	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Spa_g21229	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Spa_g52019	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Tin_g01503	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Tin_g03689	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Tin_g26632	No alias	component *(uL14) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Zm00001e000323_P001	Zm00001e000323	component RPL23 of LSU proteome component	0.34	OrthoFinder output from all 47 species
Zm00001e012721_P001	Zm00001e012721	component RPL23 of LSU proteome component	0.14	OrthoFinder output from all 47 species
Zm00001e023614_P001	Zm00001e023614	component RPL23 of LSU proteome component	0.3	OrthoFinder output from all 47 species
Zm00001e038953_P001	Zm00001e038953	component RPL23 of LSU proteome component	0.33	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022626	cytosolic ribosome	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071493	cellular response to UV-B	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000218	Ribosomal_L14P	22	140

External Links

No external refs found!

AT3G04400 (emb2171)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation