AT3G02040 (SRG3)

Aliases : SRG3

Description : senescence-related gene 3

Gene families : OG0002257 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002257_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02040

Target	Alias	Description	ECC score	Gene Family Method
Adi_g046392	SRG3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g19472	SRG3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g26572	SRG3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene22873.t1	Aspi01Gene22873	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.18G077700.1	SRG3, Ceric.18G077700	not classified & original description: pacid=50621128...	0.02	OrthoFinder output from all 47 species
Dac_g13367	SRG3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g15032	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g36540	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dde_g47677	SRG3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Gb_23497	SRG3	Glycerophosphodiester phosphodiesterase GDPD1,...	0.04	OrthoFinder output from all 47 species
Len_g11904	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10359231g0020	No alias	Glycerophosphodiester phosphodiesterase GDPD2...	0.04	OrthoFinder output from all 47 species
MA_10436986g0020	SRG3	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_27441g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp4g01320.1	SRG3	Glycerophosphodiester phosphodiesterase GDPD1,...	0.02	OrthoFinder output from all 47 species
Msp_g05939	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g15244	SRG3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g60591	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo82124	SRG3	Glycerophosphodiester phosphodiesterase GDPD2...	0.03	OrthoFinder output from all 47 species
Solyc02g094400.4.1	SRG3, Solyc02g094400	Glycerophosphodiester phosphodiesterase GDPD1,...	0.1	OrthoFinder output from all 47 species
Spa_g04518	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g07714	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006071	glycerol metabolic process	ISS	Interproscan
MF	GO:0008081	phosphoric diester hydrolase activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IDA	Interproscan
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	ISS	Interproscan
CC	GO:0009536	plastid	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0019400	alditol metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
BP	GO:0019751	polyol metabolic process	None	Extended
BP	GO:0030643	cellular phosphate ion homeostasis	IMP	Interproscan
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042578	phosphoric ester hydrolase activity	None	Extended
BP	GO:0042592	homeostatic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
BP	GO:0048878	chemical homeostasis	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055062	phosphate ion homeostasis	None	Extended
BP	GO:0055082	cellular chemical homeostasis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0098771	inorganic ion homeostasis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009267	cellular response to starvation	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
BP	GO:0009890	negative regulation of biosynthetic process	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016036	cellular response to phosphate starvation	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
BP	GO:0019374	galactolipid metabolic process	IEP	HCCA
BP	GO:0019375	galactolipid biosynthetic process	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
BP	GO:0031324	negative regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031667	response to nutrient levels	IEP	HCCA
BP	GO:0031668	cellular response to extracellular stimulus	IEP	HCCA
BP	GO:0031669	cellular response to nutrient levels	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0034762	regulation of transmembrane transport	IEP	HCCA
BP	GO:0034765	regulation of monoatomic ion transmembrane transport	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0042594	response to starvation	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	HCCA
BP	GO:0051259	protein complex oligomerization	IEP	HCCA
BP	GO:0051262	protein tetramerization	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0071496	cellular response to external stimulus	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR030395	GP_PDE_dom	39	317

External Links

No external refs found!

AT3G02040 (SRG3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation