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AT3G01680


Description : CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).


Gene families : OG0009349 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009349_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G01680
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00166p00027900 evm_27.TU.AmTr_v1... Protein SIEVE ELEMENT OCCLUSION A OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AMTR_s00166p00029650 evm_27.TU.AmTr_v1... Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
GSVIVT01000576001 No alias Protein SIEVE ELEMENT OCCLUSION C OS=Arabidopsis thaliana 0.14 OrthoFinder output from all 47 species
GSVIVT01000577001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.2 OrthoFinder output from all 47 species
GSVIVT01000578001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.17 OrthoFinder output from all 47 species
GSVIVT01007594001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01032348001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.21 OrthoFinder output from all 47 species
GSVIVT01032352001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01032353001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.07 OrthoFinder output from all 47 species
GSVIVT01032357001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.18 OrthoFinder output from all 47 species
GSVIVT01032359001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.17 OrthoFinder output from all 47 species
GSVIVT01032360001 No alias Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis thaliana 0.21 OrthoFinder output from all 47 species
Solyc03g111810.2.1 Solyc03g111810 Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.18 OrthoFinder output from all 47 species
Solyc04g026020.3.1 Solyc04g026020 Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Solyc05g013850.2.1 Solyc05g013850 Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc05g013870.4.1 Solyc05g013870 Protein SIEVE ELEMENT OCCLUSION B OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0043621 protein self-association IPI Interproscan
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Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP HCCA
MF GO:0004364 glutathione transferase activity IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0005986 sucrose biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
MF GO:0016157 sucrose synthase activity IEP HCCA
MF GO:0016688 L-ascorbate peroxidase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
BP GO:0019374 galactolipid metabolic process IEP HCCA
BP GO:0019375 galactolipid biosynthetic process IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0036293 response to decreased oxygen levels IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0070482 response to oxygen levels IEP HCCA
BP GO:0080165 callose deposition in phloem sieve plate IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR027942 SEO_N 38 320
IPR027944 SEO_C 491 728
No external refs found!