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AT2G47850


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G47850

Target Alias Description ECC score Gene Family Method Actions
AT3G06410 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.04 OrthoFinder output from all 47 species
Adi_g105935 ZFN2 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene00104.t1 ZFN1, Aspi01Gene00104 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030794 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Lfl_g09725 HUA1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Lfl_g17101 ZFN1 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
MA_137427g0010 ZFN1 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Ppi_g29535 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Solyc01g067550.3.1 Solyc01g067550 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
BP GO:0032879 regulation of localization IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP negative regulation of cell differentiationHCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 141 163
IPR000571 Znf_CCCH 48 72
IPR000571 Znf_CCCH 291 316
IPR000571 Znf_CCCH 337 362
IPR000571 Znf_CCCH 91 117
No external refs found!