AT2G46610 (At-RS31a, RS31a)

Aliases : At-RS31a, RS31a

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0002134 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002134_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G46610
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
Aop_g58168	At-RS41, RS41, ATRSP41	RNA splicing factor *(RS31/40/41) & original description: none	0.03	OrthoFinder output from all 47 species
Cre16.g674250	At-RS31, RS31,...	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Dcu_g09104	At-RS31, RS31,...	RNA splicing factor *(RS31/40/41) & original description: none	0.02	OrthoFinder output from all 47 species
MA_929266g0010	At-RS41, RS41, ATRSP41	RS31/40/41 RNA splicing factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0031072	heat shock protein binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051879	Hsp90 protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	97	159
IPR000504	RRM_dom	4	61

External Links

No external refs found!

AT2G46610 (At-RS31a, RS31a)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation