1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G44980

AT2G44980


Description : SNF2 domain-containing protein / helicase domain-containing protein


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G44980

Target Alias Description ECC score Gene Family Method Actions
Adi_g011986 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Adi_g061147 PKL, GYM, CHR6,... CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Aob_g18236 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05323 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene20233.t1 CHR5, Aspi01Gene20233 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aspi01Gene70264.t1 ATCHR12, Aspi01Gene70264 SMARCA component *(SYD/BRM/MINU) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G025000.1 CHR11, Ceric.21G025000 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020960.24 CHR5 Protein CHROMATIN REMODELING 5 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre16.g647602 CHR01, CHR1,... ATP-dependent DNA helicase DDM1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dcu_g19159 CHR11 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Ehy_g19433 ATCHR12 SMARCA component *(SYD/BRM/MINU) & original description: none 0.04 OrthoFinder output from all 47 species
Mp5g24460.1 PKL, GYM, CHR6,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Ore_g12701 CHR11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11423 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sam_g16204 No alias SMARCA component *(SYD/BRM/MINU) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29220 No alias component *(CHR5) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sam_g36819 No alias CHD3-type chromatin remodeling factor *(PKL/PKR) &... 0.02 OrthoFinder output from all 47 species
Smo177985 PKL, GYM, CHR6,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Smo440203 CHR11 Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Solyc02g068560.3.1 PKR1, CHR4,... chromatin remodeling factor (Chd3/Mi-2) 0.02 OrthoFinder output from all 47 species
Spa_g30961 CHR5 component *(CHR5) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Zm00001e040406_P002 ATCHR12, Zm00001e040406 chromatin remodeling factor (Snf2) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0004386 helicase activity ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004534 5'-3' exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0007031 peroxisome organization IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008409 5'-3' exonuclease activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010586 miRNA metabolic process IEP HCCA
BP GO:0010587 miRNA catabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
BP GO:0031048 RNA-mediated heterochromatin formation IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0034661 ncRNA catabolic process IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 369 482
IPR000330 SNF2_N 77 348
No external refs found!