AT2G44350 (CSY4, ATCS)

Aliases : CSY4, ATCS

Description : Citrate synthase family protein

Gene families : OG0001709 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001709_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G44350
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00238170	CSY4, ATCS,...	Cellular respiration.tricarboxylic acid cycle.citrate synthase	0.04	OrthoFinder output from all 47 species
Adi_g019294	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g01667	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g15375	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12383	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.34G074100.1	CSY4, ATCS,...	EC_2.3 acyltransferase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.109	CSY5	Citrate synthase, mitochondrial OS=Daucus carota	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021127.110	CSY4, ATCS	Cellular respiration.tricarboxylic acid cycle.citrate synthase	0.03	OrthoFinder output from all 47 species
Cre12.g514750	CSY4, ATCS	Cellular respiration.tricarboxylic acid cycle.citrate synthase	0.1	OrthoFinder output from all 47 species
GSVIVT01001358001	CSY4, ATCS	Cellular respiration.tricarboxylic acid cycle.citrate synthase	0.06	OrthoFinder output from all 47 species
LOC_Os02g10070.2	CSY4, ATCS,...	citrate synthase	0.03	OrthoFinder output from all 47 species
LOC_Os11g33240.1	CSY4, ATCS,...	citrate synthase	0.08	OrthoFinder output from all 47 species
Len_g10611	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Mp8g09100.1	CSY4, ATCS	citrate synthase	0.08	OrthoFinder output from all 47 species
Msp_g29828	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g19363	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.06	OrthoFinder output from all 47 species
Solyc01g073740.4.1	CSY4, ATCS,...	citrate synthase	0.06	OrthoFinder output from all 47 species
Spa_g19049	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g26689	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g00956	CSY4, ATCS	EC_2.3 acyltransferase & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e025041_P001	CSY4, ATCS,...	citrate synthase	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004108	citrate (Si)-synthase activity	IDA	Interproscan
MF	GO:0004108	citrate (Si)-synthase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005739	mitochondrion	ISM	Interproscan
CC	GO:0005739	mitochondrion	TAS	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006090	pyruvate metabolic process	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0006096	glycolytic process	RCA	Interproscan
BP	GO:0006099	tricarboxylic acid cycle	ISS	Interproscan
BP	GO:0006099	tricarboxylic acid cycle	TAS	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006165	nucleoside diphosphate phosphorylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006757	ATP generation from ADP	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IDA	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009060	aerobic respiration	RCA	Interproscan
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009132	nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009135	purine nucleoside diphosphate metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009185	ribonucleoside diphosphate metabolic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0015980	energy derivation by oxidation of organic compounds	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0036440	citrate synthase activity	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0045333	cellular respiration	None	Extended
BP	GO:0046031	ADP metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
BP	GO:0046686	response to cadmium ion	RCA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0046939	nucleotide phosphorylation	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0000104	succinate dehydrogenase activity	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0004148	dihydrolipoyl dehydrogenase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004611	phosphoenolpyruvate carboxykinase activity	IEP	HCCA
MF	GO:0004619	phosphoglycerate mutase activity	IEP	HCCA
MF	GO:0004738	pyruvate dehydrogenase activity	IEP	HCCA
MF	GO:0004739	pyruvate dehydrogenase (acetyl-transferring) activity	IEP	HCCA
MF	GO:0004742	dihydrolipoyllysine-residue acetyltransferase activity	IEP	HCCA
MF	GO:0004774	succinate-CoA ligase activity	IEP	HCCA
MF	GO:0004776	succinate-CoA ligase (GDP-forming) activity	IEP	HCCA
MF	GO:0004801	transaldolase activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005740	mitochondrial envelope	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	HCCA
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	HCCA
CC	GO:0005758	mitochondrial intermembrane space	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0005985	sucrose metabolic process	IEP	HCCA
BP	GO:0005986	sucrose biosynthetic process	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006098	pentose-phosphate shunt	IEP	HCCA
BP	GO:0006121	mitochondrial electron transport, succinate to ubiquinone	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0006739	NADP metabolic process	IEP	HCCA
BP	GO:0006740	NADPH regeneration	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006812	monoatomic cation transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008964	phosphoenolpyruvate carboxylase activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009617	response to bacterium	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009749	response to glucose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009853	photorespiration	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010359	regulation of anion channel activity	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016417	S-acyltransferase activity	IEP	HCCA
MF	GO:0016418	S-acetyltransferase activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	IEP	HCCA
MF	GO:0016744	transketolase or transaldolase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	HCCA
MF	GO:0016878	acid-thiol ligase activity	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
MF	GO:0019203	carbohydrate phosphatase activity	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0019362	pyridine nucleotide metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019646	aerobic electron transport chain	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
BP	GO:0022898	regulation of transmembrane transporter activity	IEP	HCCA
BP	GO:0022904	respiratory electron transport chain	IEP	HCCA
BP	GO:0030001	metal ion transport	IEP	HCCA
CC	GO:0030964	NADH dehydrogenase complex	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031970	organelle envelope lumen	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0032409	regulation of transporter activity	IEP	HCCA
BP	GO:0032412	regulation of monoatomic ion transmembrane transporter activity	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0034406	cell wall beta-glucan metabolic process	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
BP	GO:0035966	response to topologically incorrect protein	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0042742	defense response to bacterium	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043094	cellular metabolic compound salvage	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044070	regulation of monoatomic anion transport	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044282	small molecule catabolic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
CC	GO:0045271	respiratory chain complex I	IEP	HCCA
CC	GO:0045275	respiratory chain complex III	IEP	HCCA
CC	GO:0045281	succinate dehydrogenase complex	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:0046496	nicotinamide nucleotide metabolic process	IEP	HCCA
MF	GO:0046537	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0050307	sucrose-phosphate phosphatase activity	IEP	HCCA
MF	GO:0050308	sugar-phosphatase activity	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0051788	response to misfolded protein	IEP	HCCA
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
CC	GO:0070069	cytochrome complex	IEP	HCCA
BP	GO:0072524	pyridine-containing compound metabolic process	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
BP	GO:0080129	proteasome core complex assembly	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA
CC	GO:0098798	mitochondrial protein-containing complex	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0098803	respiratory chain complex	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1902495	transmembrane transporter complex	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
BP	GO:1903959	regulation of monoatomic anion transmembrane transport	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990351	transporter complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002020	Citrate_synthase	78	456

External Links

No external refs found!

AT2G44350 (CSY4, ATCS)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation