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AT2G43890


Description : Pectin lyase-like superfamily protein


Gene families : OG0008809 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008809_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G43890
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00031370 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AMTR_s00066p00135670 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AMTR_s00074p00182020 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AMTR_s04606p00004600 evm_27.TU.AmTr_v1... Polygalacturonase OS=Prunus persica 0.03 OrthoFinder output from all 47 species
AT1G65570 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT2G43860 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.04 OrthoFinder output from all 47 species
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.04 OrthoFinder output from all 47 species
LOC_Os01g43490.1 LOC_Os01g43490 Polygalacturonase OS=Prunus persica... 0.05 OrthoFinder output from all 47 species
LOC_Os11g14410.1 LOC_Os11g14410 Polygalacturonase OS=Prunus persica... 0.04 OrthoFinder output from all 47 species
Solyc02g067630.3.1 Solyc02g067630 Polygalacturonase OS=Prunus persica... 0.06 OrthoFinder output from all 47 species
Solyc08g014540.1.1 Solyc08g014540 Polygalacturonase OS=Prunus persica... 0.05 OrthoFinder output from all 47 species
Solyc12g019120.2.1 Solyc12g019120 Polygalacturonase OS=Prunus persica... 0.06 OrthoFinder output from all 47 species
Solyc12g019180.2.1 Solyc12g019180 Polygalacturonase OS=Prunus persica... 0.06 OrthoFinder output from all 47 species
Solyc12g019220.1.1 Solyc12g019220 Polygalacturonase OS=Prunus persica... 0.12 OrthoFinder output from all 47 species
Solyc12g096750.2.1 Solyc12g096750 Polygalacturonase OS=Prunus persica... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004737 pyruvate decarboxylase activity IEP HCCA
MF GO:0005372 water transmembrane transporter activity IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0009831 plant-type cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
MF GO:0015105 arsenite transmembrane transporter activity IEP HCCA
MF GO:0015250 water channel activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015700 arsenite transport IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042547 cell wall modification involved in multidimensional cell growth IEP HCCA
BP GO:0044070 regulation of monoatomic anion transport IEP HCCA
BP GO:0046685 response to arsenic-containing substance IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:1903959 regulation of monoatomic anion transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 56 379
No external refs found!