AT2G42660

Description : Homeodomain-like superfamily protein

Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42660

Target	Alias	Description	ECC score	Gene Family Method
Adi_g078895	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g01625	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.13G021000.1	KAN, KAN1,...	KANADI-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g17283	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g22986	KAN4, ATS	KANADI-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g14490.1	LOC_Os02g14490	Putative Myb family transcription factor At1g14600...	0.04	OrthoFinder output from all 47 species
LOC_Os08g06370.1	KAN2, LOC_Os08g06370	G2-like GARP transcription factor	0.03	OrthoFinder output from all 47 species
Len_g22909	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Len_g59713	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ppi_g39079	KAN, KAN1	KANADI-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g09465	No alias	transcription factor *(CLAUSA) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g49915	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Spa_g10529	KAN, KAN1	KANADI-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010262	somatic embryogenesis	IEP	HCCA
BP	GO:0031099	regeneration	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	53	103

External Links

No external refs found!

AT2G42660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation