AT2G41840

Description : Ribosomal protein S5 family protein

Gene families : OG0001457 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001457_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G41840

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00212950	XW6,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.28	OrthoFinder output from all 47 species
AT1G58380	XW6	Ribosomal protein S5 family protein	0.06	OrthoFinder output from all 47 species
AT3G57490	No alias	Ribosomal protein S5 family protein	0.04	OrthoFinder output from all 47 species
Adi_g040223	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Adi_g075067	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aev_g07498	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aev_g10214	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aev_g24404	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g07831	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g12737	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g12986	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g12987	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Als_g47982	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aob_g07053	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g02040	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Aop_g09364	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.35	OrthoFinder output from all 47 species
Aop_g61240	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene20101.t1	Aspi01Gene20101	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene24191.t1	Aspi01Gene24191	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0110.g045473	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0377.g067313	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Cba_g21908	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.30G013900.1	Ceric.30G013900	component *(uS5) of small ribosomal-subunit (SSU)...	0.39	OrthoFinder output from all 47 species
Ceric.31G046200.1	Ceric.31G046200	component *(uS5) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020961.135	XW6	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder output from all 47 species
Cre01.g039250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
Dac_g00614	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.22	OrthoFinder output from all 47 species
Dcu_g05334	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g49280	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dde_g04227	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
GSVIVT01033299001	No alias	40S ribosomal protein S2-4 OS=Arabidopsis thaliana	0.21	OrthoFinder output from all 47 species
Gb_04606	No alias	component RPS2 of SSU proteome	0.1	OrthoFinder output from all 47 species
Gb_04608	No alias	component RPS2 of SSU proteome	0.27	OrthoFinder output from all 47 species
Gb_04609	No alias	component RPS2 of SSU proteome	0.2	OrthoFinder output from all 47 species
LOC_Os03g59310.1	LOC_Os03g59310	component RPS2 of SSU proteome	0.36	OrthoFinder output from all 47 species
LOC_Os07g10660.1	LOC_Os07g10660	component RPS2 of SSU proteome	0.25	OrthoFinder output from all 47 species
Len_g08427	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Len_g11361	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g00692	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Lfl_g25707	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_158470g0010	No alias	component RPS2 of SSU proteome	0.17	OrthoFinder output from all 47 species
MA_565182g0010	No alias	40S ribosomal protein S2-2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp5g04380.1	No alias	component RPS2 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp5g05010.1	No alias	component RPS2 of SSU proteome	0.12	OrthoFinder output from all 47 species
Mp5g15970.1	No alias	component RPS2 of SSU proteome	0.34	OrthoFinder output from all 47 species
Msp_g07675	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Msp_g10873	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Nbi_g03400	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Nbi_g03516	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Ore_g03081	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ore_g03514	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Ore_g17004	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g11571	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pir_g29029	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Pir_g57889	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c20_18740V3.1	Pp3c20_18740	Ribosomal protein S5 family protein	0.17	OrthoFinder output from all 47 species
Pp3c24_5500V3.1	Pp3c24_5500	Ribosomal protein S5 family protein	0.01	OrthoFinder output from all 47 species
Pp3c24_5780V3.1	Pp3c24_5780	Ribosomal protein S5 family protein	0.22	OrthoFinder output from all 47 species
Ppi_g24410	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g05634	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g08630	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g25636	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Sam_g26796	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Smo67484	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	OrthoFinder output from all 47 species
Solyc04g063290.3.1	Solyc04g063290	component RPS2 of SSU proteome	0.43	OrthoFinder output from all 47 species
Solyc04g074300.3.1	Solyc04g074300	component RPS2 of SSU proteome	0.48	OrthoFinder output from all 47 species
Spa_g13171	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Spa_g14513	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Spa_g17385	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Spa_g38186	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g40249	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.32	OrthoFinder output from all 47 species
Spa_g47984	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.25	OrthoFinder output from all 47 species
Spa_g50366	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Spa_g57025	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Tin_g01630	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Tin_g04436	No alias	component *(uS5) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e006090_P001	Zm00001e006090	component RPS2 of SSU proteome	0.25	OrthoFinder output from all 47 species
Zm00001e011816_P001	Zm00001e011816	component RPS2 of SSU proteome	0.26	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005853	eukaryotic translation elongation factor 1 complex	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0042991	obsolete transcription factor import into nucleus	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005324	Ribosomal_S5_C	179	245
IPR013810	Ribosomal_S5_N	96	160

External Links

No external refs found!

AT2G41840

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation