AT2G40970 (MYBC1)

Aliases : MYBC1

Description : Homeodomain-like superfamily protein

Gene families : OG0000124 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000124_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G40970

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00081480	ARR11,...	RNA biosynthesis.transcriptional activation.ARR-B...	0.03	OrthoFinder output from all 47 species
AMTR_s00101p00128190	evm_27.TU.AmTr_v1...	Transcription factor LUX OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AT1G67710	ARR11	response regulator 11	0.05	OrthoFinder output from all 47 species
Aev_g04595	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.03	OrthoFinder output from all 47 species
Aev_g25103	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.02	OrthoFinder output from all 47 species
Als_g19728	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g34149	No alias	component *(LUX) of circadian clock Evening complex (EC)...	0.03	OrthoFinder output from all 47 species
Aob_g14548	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g15800	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01816	ARR11	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13514	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.02	OrthoFinder output from all 47 species
Aop_g42522	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g58078	MYBC1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g70563	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene27417.t1	LUX, PCL1,...	component *(LUX) of circadian clock Evening complex (EC)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene58607.t1	MYBC1, Aspi01Gene58607	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0041.g026716	ARR1, RR1	subgroup ARR-B transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g16091	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g49913	RR2, ARR2	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.04G046400.1	ARR11, Ceric.04G046400	subgroup ARR-B transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.31G008400.1	Ceric.31G008400	subgroup ARR-B transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.19	MYBC1	No description available	0.02	OrthoFinder output from all 47 species
Cre02.g083750	LUX, PCL1	Transcription factor BOA OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre05.g243000	ARR1, RR1	RNA biosynthesis.transcriptional activation.ARR-B...	0.03	OrthoFinder output from all 47 species
Dac_g02359	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g47938	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g04897	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g05377	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g00840	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g08391	LUX, PCL1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g13817	No alias	component *(LUX) of circadian clock Evening complex (EC)...	0.03	OrthoFinder output from all 47 species
Ehy_g14477	RR14, ARR14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g20630	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Gb_15501	ARR1, RR1	B-type cytokinin ARR response activator. transcription...	0.03	OrthoFinder output from all 47 species
LOC_Os01g74020.1	LUX, PCL1, LOC_Os01g74020	component LUX of circadian clock Evening complex (EC)	0.03	OrthoFinder output from all 47 species
LOC_Os05g34110.1	LOC_Os05g34110	Transcription factor MYBC1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Lfl_g28555	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_114951g0010	ARR11	B-type cytokinin ARR response activator. transcription...	0.03	OrthoFinder output from all 47 species
MA_12161g0010	RR14, ARR14	Two-component response regulator ORR23 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
MA_210494g0010	RR12, ARR12	B-type cytokinin ARR response activator. transcription...	0.03	OrthoFinder output from all 47 species
MA_601142g0010	RR2, ARR2	B-type cytokinin ARR response activator. transcription...	0.04	OrthoFinder output from all 47 species
Msp_g15114	MYBC1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g24147	ARR1, RR1	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g20473	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.02	OrthoFinder output from all 47 species
Pir_g20141	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g23834	ARR10, RR10	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g05145	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.02	OrthoFinder output from all 47 species
Ppi_g05219	RR12, ARR12	subgroup ARR-B transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0037.g011863	MYBC1	not classified & original description: CDS=1-1491	0.05	OrthoFinder output from all 47 species
Sam_g39385	No alias	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo36646	LUX, PCL1	Multi-process regulation.circadian clock.evening element...	0.03	OrthoFinder output from all 47 species
Solyc07g005140.4.1	RR12, ARR12,...	B-type cytokinin ARR response activator. transcription...	0.04	OrthoFinder output from all 47 species
Solyc10g080960.1.1	Solyc10g080960	Transcription factor MYBC1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Solyc12g010330.2.1	RR18, ARR18,...	B-type cytokinin ARR response activator. transcription...	0.03	OrthoFinder output from all 47 species
Spa_g51591	ARR10, RR10	subgroup ARR-B transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g36879	LUX, PCL1	component *(LUX) of circadian clock Evening complex (EC)...	0.03	OrthoFinder output from all 47 species
Zm00001e013844_P002	RR12, ARR12,...	B-type cytokinin ARR response activator. transcription...	0.03	OrthoFinder output from all 47 species
Zm00001e019299_P002	Zm00001e019299	Transcription factor PCL1 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IMP	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000217	DNA secondary structure binding	IEP	HCCA
MF	GO:0003680	minor groove of adenine-thymine-rich DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
MF	GO:0008430	selenium binding	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009526	plastid envelope	IEP	HCCA
BP	GO:0009639	response to red or far red light	IEP	HCCA
BP	GO:0009641	shade avoidance	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009804	coumarin metabolic process	IEP	HCCA
BP	GO:0009805	coumarin biosynthetic process	IEP	HCCA
CC	GO:0009941	chloroplast envelope	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
MF	GO:0019900	kinase binding	IEP	HCCA
MF	GO:0019901	protein kinase binding	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0031967	organelle envelope	IEP	HCCA
CC	GO:0031975	envelope	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0048768	root hair cell tip growth	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	109	157

External Links

No external refs found!

AT2G40970 (MYBC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation