AT2G40810 (ATG18C, ATATG18C)

Aliases : ATG18C, ATATG18C

Description : homolog of yeast autophagy 18C

Gene families : OG0000802 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000802_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G40810
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
Ceric.14G026400.1	AtATG18a, Ceric.14G026400	component *(ATG18) of autophagosome ATG9-2-18 membrane...	0.03	OrthoFinder output from all 47 species
Ceric.28G041900.1	ATG18D,...	component *(ATG18) of autophagosome ATG9-2-18 membrane...	0.03	OrthoFinder output from all 47 species
Ceric.37G046000.1	AtATG18a, Ceric.37G046000	component *(ATG18) of autophagosome ATG9-2-18 membrane...	0.04	OrthoFinder output from all 47 species
GSVIVT01010943001	AtATG18a	Vesicle trafficking.autophagosome formation.ATG9-2-18...	0.03	OrthoFinder output from all 47 species
LOC_Os01g70780.1	AtATG18a, LOC_Os01g70780	component ATG18 of autophagosome ATG9-2-18 membrane...	0.02	OrthoFinder output from all 47 species
MA_29107g0020	ATG18D, ATATG18D	component ATG18 of autophagosome ATG9-2-18 membrane...	0.04	OrthoFinder output from all 47 species
Mp1g05420.1	AtATG18a	component ATG18 of autophagosome ATG9-2-18 membrane...	0.02	OrthoFinder output from all 47 species
Nbi_g09021	AtATG18a	component *(ATG18) of autophagosome ATG9-2-18 membrane...	0.02	OrthoFinder output from all 47 species
Pir_g12916	AtATG18a	component *(ATG18) of autophagosome ATG9-2-18 membrane...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006914	autophagy	IBA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0031090	organelle membrane	IBA	Interproscan
BP	GO:0031667	response to nutrient levels	None	Extended
MF	GO:0035091	phosphatidylinositol binding	None	Extended
BP	GO:0042594	response to starvation	IBA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0061919	process utilizing autophagic mechanism	None	Extended
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IBA	Interproscan
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901981	phosphatidylinositol phosphate binding	None	Extended
MF	GO:1902936	phosphatidylinositol bisphosphate binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
BP	GO:0000303	response to superoxide	IEP	HCCA
BP	GO:0000305	response to oxygen radical	IEP	HCCA
CC	GO:0000932	P-body	IEP	HCCA
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003997	acyl-CoA oxidase activity	IEP	HCCA
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0006855	xenobiotic transmembrane transport	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009733	response to auxin	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010262	somatic embryogenesis	IEP	HCCA
BP	GO:0010431	seed maturation	IEP	HCCA
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	HCCA
MF	GO:0030145	manganese ion binding	IEP	HCCA
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	HCCA
BP	GO:0031099	regeneration	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
CC	GO:0035770	ribonucleoprotein granule	IEP	HCCA
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042908	xenobiotic transport	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
MF	GO:0050072	m7G(5')pppN diphosphatase activity	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
BP	GO:0110154	RNA decapping	IEP	HCCA
BP	GO:0110156	methylguanosine-cap decapping	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	248	273

External Links

No external refs found!

AT2G40810 (ATG18C, ATATG18C)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation