AT2G40350

Description : Integrase-type DNA-binding superfamily protein

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G40350

Target	Alias	Description	ECC score	Gene Family Method
AT1G12980	ESR1, DRN	Integrase-type DNA-binding superfamily protein	0.04	OrthoFinder output from all 47 species
Adi_g067400	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g36093	HRE2	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Cba_g07845	ERF72, EBP, ATEBP, RAP2.3	transcription factor component *(HRE/RAP2.12) of...	0.02	OrthoFinder output from all 47 species
Ceric.01G120100.1	HRE2, Ceric.01G120100	transcription factor component *(HRE/RAP2.12) of...	0.04	OrthoFinder output from all 47 species
Dac_g06915	ATERF12, ERF12	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g14308	No alias	subgroup ERF-I transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g15037	DEAR2	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g23248	RAP2.4	subgroup ERF-I transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g37743	No alias	subgroup ERF-IV/DREB2 transcription factor & original...	0.04	OrthoFinder output from all 47 species
LOC_Os06g09390.1	RAP2.12, LOC_Os06g09390	transcription factor (ERF)	0.03	OrthoFinder output from all 47 species
Len_g38064	CRF3	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g02746	DEAR1, CEJ1, ATERF#011	subgroup ERF-II transcription factor *(ERF19/20) &...	0.02	OrthoFinder output from all 47 species
Pir_g25028	No alias	subgroup ERF-VI transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g39319	No alias	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pnu_g22604	ATERF3, ERF3	subgroup ERF-VIII transcription factor & original...	0.03	OrthoFinder output from all 47 species
Pnu_g25395	DREB2A, DREB2	subgroup ERF-IV/DREB2 transcription factor & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010286	heat acclimation	IEP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	65	115

External Links

No external refs found!

AT2G40350

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation