1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT2G40070

AT2G40070


Description : BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).


Gene families : OG0001027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001027_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G40070
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00238480 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Adi_g075148 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g18215 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01872 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Als_g37153 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g11863 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g30466 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g07689 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76969 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.31G009200.1 Ceric.31G009200 not classified & original description: pacid=50574505... 0.04 OrthoFinder output from all 47 species
Dde_g03402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_23581 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_32839g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Msp_g14293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g42334 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03038 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g38965 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0030.g010358 No alias not classified & original description: CDS=1512-3749 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012192 No alias not classified & original description: CDS=121-2313 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020173 No alias not classified & original description: CDS=1-1482 0.03 OrthoFinder output from all 47 species
Sam_g26525 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26615 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0010048 vernalization response RCA Interproscan
BP GO:0043481 anthocyanin accumulation in tissues in response to UV light RCA Interproscan
BP GO:0048440 carpel development RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000919 cell plate assembly IEP HCCA
BP GO:0001558 regulation of cell growth IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005828 kinetochore microtubule IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005876 spindle microtubule IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0007015 actin filament organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008360 regulation of cell shape IEP HCCA
CC GO:0009504 cell plate IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010071 root meristem specification IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010091 trichome branching IEP HCCA
BP GO:0010482 regulation of epidermal cell division IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0030856 regulation of epithelial cell differentiation IEP HCCA
BP GO:0031128 developmental induction IEP HCCA
BP GO:0031129 inductive cell-cell signaling IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0032465 regulation of cytokinesis IEP HCCA
BP GO:0032467 positive regulation of cytokinesis IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032886 regulation of microtubule-based process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0042814 monopolar cell growth IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
BP GO:0045010 actin nucleation IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0045604 regulation of epidermal cell differentiation IEP HCCA
BP GO:0045682 regulation of epidermis development IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048444 floral organ morphogenesis IEP HCCA
BP GO:0048530 fruit morphogenesis IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0048829 root cap development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051493 regulation of cytoskeleton organization IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051781 positive regulation of cell division IEP HCCA
BP GO:0051788 response to misfolded protein IEP HCCA
BP GO:0060236 regulation of mitotic spindle organization IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070507 regulation of microtubule cytoskeleton organization IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0090224 regulation of spindle organization IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
BP GO:0090421 embryonic meristem initiation IEP HCCA
BP GO:0090697 post-embryonic plant organ morphogenesis IEP HCCA
BP GO:0097435 supramolecular fiber organization IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1905392 plant organ morphogenesis IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
BP GO:2000024 regulation of leaf development IEP HCCA
BP GO:2000039 regulation of trichome morphogenesis IEP HCCA
BP GO:2000694 regulation of phragmoplast microtubule organization IEP HCCA

No InterPro domains available for this sequence

No external refs found!