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  5. AT2G38020

AT2G38020 (VCL1, EMB258, MAN)


Aliases : VCL1, EMB258, MAN

Description : vacuoleless1 (VCL1)


Gene families : OG0004533 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004533_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G38020
Cluster HCCA: Cluster_152

Target Alias Description ECC score Gene Family Method Actions
Aev_g06149 VCL1, EMB258, MAN component *(VPS16/VCL1) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
MA_74180g0010 VCL1, EMB258, MAN Protein VACUOLELESS1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Smo80688 VCL1, EMB258, MAN Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
Zm00001e028014_P001 VCL1, EMB258,... component VPS16/VCL1 of HOPS/CORVET membrane tethering complexes 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation RCA Interproscan
BP GO:0006487 protein N-linked glycosylation RCA Interproscan
BP GO:0006623 protein targeting to vacuole RCA Interproscan
BP GO:0007030 Golgi organization RCA Interproscan
BP GO:0007033 vacuole organization RCA Interproscan
BP GO:0007033 vacuole organization TAS Interproscan
CC GO:0009705 plant-type vacuole membrane IDA Interproscan
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Interproscan
BP GO:0010413 glucuronoxylan metabolic process RCA Interproscan
BP GO:0016926 protein desumoylation RCA Interproscan
BP GO:0045492 xylan biosynthetic process RCA Interproscan
BP GO:0050665 hydrogen peroxide biosynthetic process RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004707 MAP kinase activity IEP HCCA
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
CC GO:0005665 RNA polymerase II, core complex IEP HCCA
CC GO:0005829 cytosol IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0016485 protein processing IEP HCCA
CC GO:0016591 RNA polymerase II, holoenzyme IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR006925 Vps16_C 528 835
IPR006926 Vps16_N 8 429
No external refs found!