AT2G37270 (RPS5B, ATRPS5B)

Aliases : RPS5B, ATRPS5B

Description : ribosomal protein 5B

Gene families : OG0002478 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002478_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G37270

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00119380	RPS5B, ATRPS5B,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	OrthoFinder output from all 47 species
AMTR_s00090p00050460	RPS5B, ATRPS5B,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	OrthoFinder output from all 47 species
Adi_g078109	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Adi_g078110	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aev_g08152	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aev_g24264	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g00869	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Als_g37844	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g01983	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Azfi_s0032.g024587	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Azfi_s0374.g067208	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Cba_g20695	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.09G021200.1	AML1, RPS5A,...	component *(uS7) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Ceric.09G021300.1	RPS5B, ATRPS5B,...	component *(uS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ceric.09G021500.1	AML1, RPS5A,...	component *(uS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.09G021600.1	AML1, RPS5A,...	component *(uS7) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021332.10	RPS5B, ATRPS5B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.35	OrthoFinder output from all 47 species
Cre06.g290950	RPS5B, ATRPS5B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
Dac_g10905	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Dcu_g12789	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dde_g00502	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ehy_g00502	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01026328001	RPS5B, ATRPS5B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	OrthoFinder output from all 47 species
GSVIVT01033419001	RPS5B, ATRPS5B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.36	OrthoFinder output from all 47 species
Gb_04954	RPS5B, ATRPS5B	component RPS5 of SSU proteome	0.15	OrthoFinder output from all 47 species
Gb_10560	AML1, RPS5A, ATRPS5A	component RPS5 of SSU proteome	0.04	OrthoFinder output from all 47 species
Gb_10561	AML1, RPS5A, ATRPS5A	component RPS5 of SSU proteome	0.17	OrthoFinder output from all 47 species
LOC_Os01g01060.1	RPS5B, ATRPS5B,...	component RPS5 of SSU proteome	0.27	OrthoFinder output from all 47 species
LOC_Os11g29190.1	RPS5B, ATRPS5B,...	component RPS5 of SSU proteome	0.19	OrthoFinder output from all 47 species
Len_g06369	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Len_g46813	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g46814	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Lfl_g27142	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_10428487g0010	RPS5B, ATRPS5B	component RPS5 of SSU proteome	0.24	OrthoFinder output from all 47 species
Mp3g10570.1	RPS5B, ATRPS5B	component RPS5 of SSU proteome	0.38	OrthoFinder output from all 47 species
Msp_g06764	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Nbi_g09424	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ore_g19556	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pir_g10573	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pnu_g03688	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c20_18970V3.1	RPS5B, ATRPS5B,...	ribosomal protein 5B	0.21	OrthoFinder output from all 47 species
Pp3c23_6150V3.1	RPS5B, ATRPS5B,...	ribosomal protein 5B	0.12	OrthoFinder output from all 47 species
Pp3c8_16820V3.1	RPS5B, ATRPS5B,...	ribosomal protein 5B	0.17	OrthoFinder output from all 47 species
Pp3c8_16860V3.1	RPS5B, ATRPS5B,...	ribosomal protein 5B	0.22	OrthoFinder output from all 47 species
Ppi_g23590	AML1, RPS5A, ATRPS5A	component *(uS7) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Ppi_g62524	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g15969	No alias	component *(uS7) of small ribosomal-subunit (SSU)...	0.27	OrthoFinder output from all 47 species
Sam_g25932	No alias	component *(uS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo164593	AML1, RPS5A, ATRPS5A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.27	OrthoFinder output from all 47 species
Smo271466	RPS5B, ATRPS5B	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder output from all 47 species
Solyc10g078620.1.1	AML1, RPS5A,...	component RPS5 of SSU proteome	0.29	OrthoFinder output from all 47 species
Solyc11g042610.2.1	RPS5B, ATRPS5B,...	component RPS5 of SSU proteome	0.35	OrthoFinder output from all 47 species
Spa_g17272	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Spa_g37870	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Tin_g01481	RPS5B, ATRPS5B	component *(uS7) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Zm00001e025608_P002	RPS5B, ATRPS5B,...	component RPS5 of SSU proteome	0.38	OrthoFinder output from all 47 species
Zm00001e031425_P002	AML1, RPS5A,...	component RPS5 of SSU proteome	0.35	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR023798	Ribosomal_S7_dom	62	207

External Links

No external refs found!

AT2G37270 (RPS5B, ATRPS5B)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation