AT2G32060

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene families : OG0001020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001020_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G32060

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00079060	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder output from all 47 species
Adi_g102620	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g129311	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Aev_g00488	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ala_g12283	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Ala_g16289	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Ala_g32040	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ala_g38702	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Als_g09029	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Als_g22550	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aob_g36028	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g15941	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Aop_g19990	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g30423	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Aop_g67327	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Aspi01Gene12124.t1	Aspi01Gene12124	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene17919.t1	Aspi01Gene17919	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aspi01Gene44625.t1	Aspi01Gene44625	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0161.g054093	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Cba_g17646	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cba_g68172	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g71372	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.37G058700.1	Ceric.37G058700	component *(eS12) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Ceric.37G058800.1	Ceric.37G058800	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ceric.37G058900.1	Ceric.37G058900	component *(eS12) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.34	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.29	OrthoFinder output from all 47 species
Cre04.g214503	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.32	OrthoFinder output from all 47 species
Dac_g03015	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Dac_g03474	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Dac_g25477	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Dcu_g05975	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g18711	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g23793	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g38565	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dde_g00249	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g03052	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
GSVIVT01023591001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01034219001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	OrthoFinder output from all 47 species
Gb_19269	No alias	component RPS12 of SSU proteome	0.16	OrthoFinder output from all 47 species
Gb_38833	No alias	component RPS12 of SSU proteome	0.13	OrthoFinder output from all 47 species
LOC_Os07g05580.1	LOC_Os07g05580	component RPS12 of SSU proteome	0.28	OrthoFinder output from all 47 species
LOC_Os07g12650.1	LOC_Os07g12650	component RPS12 of SSU proteome	0.26	OrthoFinder output from all 47 species
Len_g03490	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g05775	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g49897	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g54633	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Lfl_g14326	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Lfl_g20839	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
MA_16920g0010	No alias	component RPS12 of SSU proteome	0.16	OrthoFinder output from all 47 species
Mp7g11470.1	No alias	component RPS12 of SSU proteome	0.34	OrthoFinder output from all 47 species
Msp_g03347	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Nbi_g05093	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g32162	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ore_g19146	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g06661	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g41112	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pnu_g14965	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c17_3630V3.1	Pp3c17_3630	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.14	OrthoFinder output from all 47 species
Ppi_g06093	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g20762	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g31355	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g50714	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014587	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015439	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.09	OrthoFinder output from all 47 species
Sam_g04208	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Sam_g06992	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g09099	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g18573	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Sam_g48244	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo441919	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	OrthoFinder output from all 47 species
Solyc01g103800.3.1	Solyc01g103800	component RPS12 of SSU proteome	0.33	OrthoFinder output from all 47 species
Solyc12g042650.2.1	Solyc12g042650	component RPS12 of SSU proteome	0.4	OrthoFinder output from all 47 species
Spa_g05809	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Spa_g17185	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Spa_g22036	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.19	OrthoFinder output from all 47 species
Spa_g42585	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Spa_g43206	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Tin_g00435	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Tin_g09574	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g35882	No alias	component *(eS12) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e009380_P001	Zm00001e009380	component RPS12 of SSU proteome	0.33	OrthoFinder output from all 47 species
Zm00001e027021_P002	Zm00001e027021	component RPS12 of SSU proteome	0.02	OrthoFinder output from all 47 species
Zm00001e032507_P001	Zm00001e032507	component RPS12 of SSU proteome	0.03	OrthoFinder output from all 47 species
Zm00001e033149_P001	Zm00001e033149	component RPS12 of SSU proteome	0.16	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009853	photorespiration	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043094	cellular metabolic compound salvage	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0009955	adaxial/abaxial pattern specification	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0048513	animal organ development	IEP	HCCA
BP	GO:0048569	post-embryonic animal organ development	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0060688	regulation of morphogenesis of a branching structure	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0090506	axillary shoot meristem initiation	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA
BP	GO:1905428	regulation of plant organ formation	IEP	HCCA
BP	GO:2000032	regulation of secondary shoot formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45	30	123

External Links

No external refs found!

AT2G32060

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation