AT2G30620

Description : winged-helix DNA-binding transcription factor family protein

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G30620

Target	Alias	Description	ECC score	Gene Family Method
Adi_g103074	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g35464	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g44710	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03555	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene00121.t1	Aspi01Gene00121	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene10645.t1	Aspi01Gene10645	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene23118.t1	Aspi01Gene23118	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene25496.t1	HIS1-3, Aspi01Gene25496	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene56473.t1	HIS1-3, Aspi01Gene56473	chromatin architectural modulator *(HMGA) & original...	0.02	OrthoFinder output from all 47 species
Ceric.34G011100.1	HIS1-3, Ceric.34G011100	linker histone *(H1) & original description:...	0.03	OrthoFinder output from all 47 species
Cre13.g567450	HIS1-3	Chromatin organisation.histones.H1 linker histone	0.05	OrthoFinder output from all 47 species
Dcu_g00585	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g10146	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g10325	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Gb_02738	No alias	linker histone (H1)	0.06	OrthoFinder output from all 47 species
Gb_03348	HIS1-3	linker histone (H1)	0.05	OrthoFinder output from all 47 species
LOC_Os04g18090.1	HIS1-3, LOC_Os04g18090	linker histone (H1)	0.11	OrthoFinder output from all 47 species
LOC_Os07g08710.1	LOC_Os07g08710	linker histone (H1)	0.05	OrthoFinder output from all 47 species
Len_g04604	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g23782	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g56264	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
MA_10436125g0010	HIS1-3	linker histone (H1)	0.04	OrthoFinder output from all 47 species
MA_6409g0010	HIS1-3	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Nbi_g04093	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Pir_g20263	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g08093	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g10947	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c18_14270V3.1	Pp3c18_14270	winged-helix DNA-binding transcription factor family protein	0.03	OrthoFinder output from all 47 species
Sam_g11042	No alias	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g066100.3.1	Solyc09g066100	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Solyc09g083380.4.1	Solyc09g083380	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Spa_g09323	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g09324	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g18792	HIS1-3	linker histone *(H1) & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g50934	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g50935	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e006018_P006	Zm00001e006018	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.03	OrthoFinder output from all 47 species
Zm00001e011859_P001	Zm00001e011859	linker histone (H1)	0.06	OrthoFinder output from all 47 species
Zm00001e032965_P005	Zm00001e032965	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Zm00001e036602_P004	HIS1-3, Zm00001e036602	linker histone (H1)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005739	mitochondrion	IDA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	ISS	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006007	glucose catabolic process	IEP	HCCA
BP	GO:0006284	base-excision repair	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0019320	hexose catabolic process	IEP	HCCA
BP	GO:0046365	monosaccharide catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	62	127

External Links

No external refs found!

AT2G30620

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation