AT2G29660

Description : zinc finger (C2H2 type) family protein

Gene families : OG0001550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001550_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G29660

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00226800	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
Aspi01Gene24042.t1	Aspi01Gene24042	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g33322	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Dac_g15387	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g05965	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01024778001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
LOC_Os01g57650.1	LOC_Os01g57650	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Len_g59194	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0053.g014168	No alias	not classified & original description: CDS=1-1884	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0089.g018625	No alias	not classified & original description: CDS=1-1434	0.03	OrthoFinder output from all 47 species
Solyc04g081370.2.1	Solyc04g081370	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Spa_g18941	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e008786_P002	Zm00001e008786	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e024498_P001	Zm00001e024498	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006694	steroid biosynthetic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008202	steroid metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016128	phytosteroid metabolic process	None	Extended
BP	GO:0016129	phytosteroid biosynthetic process	None	Extended
BP	GO:0016131	brassinosteroid metabolic process	None	Extended
BP	GO:0016132	brassinosteroid biosynthetic process	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
CC	GO:0031225	obsolete anchored component of membrane	TAS	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000741	karyogamy	IEP	HCCA
BP	GO:0001558	regulation of cell growth	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004871	obsolete signal transducer activity	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006816	calcium ion transport	IEP	HCCA
BP	GO:0006997	nucleus organization	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
MF	GO:0008395	steroid hydroxylase activity	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009690	cytokinin metabolic process	IEP	HCCA
BP	GO:0010197	polar nucleus fusion	IEP	HCCA
BP	GO:0010268	brassinosteroid homeostasis	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
BP	GO:0022603	regulation of anatomical structure morphogenesis	IEP	HCCA
BP	GO:0022604	regulation of cell morphogenesis	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0042814	monopolar cell growth	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048284	organelle fusion	IEP	HCCA
BP	GO:0048366	leaf development	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0051510	regulation of unidimensional cell growth	IEP	HCCA
BP	GO:0055088	lipid homeostasis	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT2G29660

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation