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  5. AT2G29140

AT2G29140 (PUM3, APUM3)


Aliases : PUM3, APUM3

Description : pumilio 3


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G29140

Target Alias Description ECC score Gene Family Method Actions
Adi_g082437 PUM3, APUM3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g06713 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0141.g051336 PUM1, APUM1 not classified & original description: CDS=1-2016 0.03 OrthoFinder output from all 47 species
Ehy_g04043 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g16700.1 PUM1, APUM1 Pumilio homolog 1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g31591 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10325 PUM1, APUM1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0003.g001524 APUM6, PUM6 not classified & original description: CDS=1-2589 0.02 OrthoFinder output from all 47 species
Sam_g16358 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo1983 APUM4, PUM4 Pumilio homolog 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Spa_g12530 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g15133 APUM2, PUM2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003729 mRNA binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003978 UDP-glucose 4-epimerase activity IEP HCCA
MF GO:0004108 citrate (Si)-synthase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004805 trehalose-phosphatase activity IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0005992 trehalose biosynthetic process IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006152 purine nucleoside catabolic process IEP HCCA
BP GO:0006213 pyrimidine nucleoside metabolic process IEP HCCA
BP GO:0006218 uridine catabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008477 purine nucleosidase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009164 nucleoside catabolic process IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
BP GO:0009561 megagametogenesis IEP HCCA
BP GO:0009627 systemic acquired resistance IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP HCCA
BP GO:0034976 response to endoplasmic reticulum stress IEP HCCA
MF GO:0036440 citrate synthase activity IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
BP GO:0042454 ribonucleoside catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
MF GO:0045437 uridine nucleosidase activity IEP HCCA
BP GO:0046108 uridine metabolic process IEP HCCA
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP HCCA
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP HCCA
BP GO:0046135 pyrimidine nucleoside catabolic process IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0047622 adenosine nucleosidase activity IEP HCCA
MF GO:0047724 inosine nucleosidase activity IEP HCCA
MF GO:0050263 ribosylpyrimidine nucleosidase activity IEP HCCA
MF GO:0050373 UDP-arabinose 4-epimerase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070063 RNA polymerase binding IEP HCCA
BP GO:0072523 purine-containing compound catabolic process IEP HCCA
BP GO:0072529 pyrimidine-containing compound catabolic process IEP HCCA
MF GO:0072585 xanthosine nucleotidase activity IEP HCCA
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 627 657
IPR001313 Pumilio_RNA-bd_rpt 815 836
IPR001313 Pumilio_RNA-bd_rpt 737 768
IPR001313 Pumilio_RNA-bd_rpt 666 694
IPR001313 Pumilio_RNA-bd_rpt 893 919
IPR001313 Pumilio_RNA-bd_rpt 698 731
IPR001313 Pumilio_RNA-bd_rpt 771 801
IPR001313 Pumilio_RNA-bd_rpt 844 876
IPR012940 NABP 359 625
IPR012940 NABP 265 361
No external refs found!