AT2G28350 (ARF10)

Aliases : ARF10

Description : auxin response factor 10

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G28350

Target	Alias	Description	ECC score	Gene Family Method
Adi_g025684	ARF9	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g118366	ARF1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g26950	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g12905	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene45721.t1	ARF6, Aspi01Gene45721	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Dcu_g11626	HSS, ARF1-BP, ARF2, ORE14	ARF-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01021128001	ARF3, ETT	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01035204001	ARF8, ATARF8	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0142.g022838	ARF1	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Smo437944	HSS, ARF1-BP, ARF2, ORE14	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Solyc03g118290.3.1	HSS, ARF1-BP,...	transcription factor (ARF)	0.04	OrthoFinder output from all 47 species
Zm00001e003229_P002	ARF6, Zm00001e003229	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e006577_P003	ARF8, ATARF8,...	transcription factor (ARF)	0.02	OrthoFinder output from all 47 species
Zm00001e018126_P002	ARF6, Zm00001e018126	transcription factor (ARF)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007389	pattern specification process	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009734	auxin-activated signaling pathway	IMP	Interproscan
BP	GO:0009738	abscisic acid-activated signaling pathway	IMP	Interproscan
BP	GO:0009743	response to carbohydrate	IMP	Interproscan
BP	GO:0009755	hormone-mediated signaling pathway	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009962	regulation of flavonoid biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010154	fruit development	IMP	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031537	regulation of anthocyanin metabolic process	None	Extended
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IMP	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0035198	miRNA binding	ISS	Interproscan
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048366	leaf development	IMP	Interproscan
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048441	petal development	IMP	Interproscan
BP	GO:0048442	sepal development	IMP	Interproscan
BP	GO:0048589	developmental growth	IMP	Interproscan
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048829	root cap development	IMP	Interproscan
BP	GO:0048829	root cap development	IGI	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051301	cell division	IGI	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061980	regulatory RNA binding	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0009744	response to sucrose	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010054	trichoblast differentiation	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
BP	GO:0034285	response to disaccharide	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	115	216
IPR010525	ARF_dom	278	360

External Links

No external refs found!

AT2G28350 (ARF10)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation